CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g46720

Gene name KCS13 (3-KETOACYL-COA SYNTHASE 13)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At2g46720 819284 KCS13 (3-KETOACYL-COA SYNTHASE 13) Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.67 81.6 At1g16705 838241 p300/CBP acetyltransferase-related protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g24260 839040 SEP3 (SEPALLATA3) Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif. S.X. H.G.
0.67 81.6 At5g15800 831436 SEP1 (SEPALLATA1) Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3. S.X. H.G.
0.46 59.8 At3g54340 824601 AP3 (APETALA 3) Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
126.8 99.9 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
125.5 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
118.3 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
117.7 99.9 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
115.3 99.9 E-MEXP-1443-raw-cel-1581869745
113.2 99.9 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
110.1 99.9 E-MEXP-1443-raw-cel-1581869515
88.7 99.9 E-MEXP-1443-raw-cel-1581869803
83.9 99.9 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
83.7 99.9 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.98 0 1550 At3g10280 820190 KCS14 (3-KETOACYL-COA SYNTHASE 14) Encodes KCS14, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.10 8e-10 65 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. C.G. S.X.
0.08 8e-7 56 At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.09 2e-4 48 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.03 7e-4 46 At2g15090 815998 KCS8 (3-KETOACYL-COA SYNTHASE 8) Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.01 1e-2 42 At5g62220 836343 exostosin family protein F:catalytic activity;P:unknown;C:chloroplast, membrane;POM C.G. S.X.
0.04 1e-2 42 At4g34510 829602 KCS17 (3-KETOACYL-COA SYNTHASE 17) Encodes KCS17, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.02 1e-2 42 At2g16280 816124 KCS9 (3-KETOACYL-COA SYNTHASE 9) Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.03 1e-2 42 At1g19440 838528 KCS4 (3-KETOACYL-COA SYNTHASE 4) Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Glycine max Gma.15547.1.S1_at BG653092 - - 5e-16 At1g19440 KCS4 (3-KETOACYL-COA SYNTHASE 4) C.G. S.X.
0.06 5e-3 42 Hordeum vulgare Contig22130_at Contig22130 - - 5e-6 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.03 9e-2 40 Oryza sativa Os05g0574600 AK070754.1 - Fatty acid elongase 1-like protein 3e-13 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.04 2e-1 38 Populus trichocarpa Ptp.3386.1.S1_s_at CV245898 beta-ketoacyl-coa synthase family protein - 3e-22 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.06 5e-5 50 Triticum aestivum Ta.4398.1.S1_at BJ259927 - - 4e-7 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1615413_at CB972695 hypothetical protein LOC100260817 - 9e-14 At1g19440 KCS4 (3-KETOACYL-COA SYNTHASE 4) C.G. S.X.
0.02 2e-2 40 Zea mays Zm.4664.1.A1_at AI737885 fatty acid elongase - 2e-1 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0000038 The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater.
X GO:0030497 The elongation of a fatty acid chain by the sequential addition of two-carbon units.
X GO:0042335 The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00040 Fatty acid elongation and wax biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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