CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g46700

Gene name calcium-dependent protein kinase, putative / CDPK, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g46700 819282 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MOPFBVA S.X. H.G.
0.29 30.3 At4g11800 826786 hydrolase/ protein serine/threonine phosphatase F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endoplasmic reticulum;BPO S.X. H.G.
0.20 14.4 At1g12470 837804 Pep3/Vps18/deep orange family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPB S.X. H.G.
0.20 14.4 At3g58580 825027 hydrolase F:hydrolase activity;P:unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.18 11.4 At5g61840 836306 GUT1 F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBF S.X. H.G.
0.18 11.4 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP S.X. H.G.
0.14 6.8 At5g11040 830971 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.11 4.1 At1g43690 840956 ubiquitin interaction motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
81.9 99.9 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
66.6 99.8 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
41.5 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
37.5 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.9 99.6 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
20.9 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.0 99.6 GSM184634 Arabidopsis, root cells, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
16.9 99.5 GSM184921 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
15.2 99.4 GSM265474 Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
14.1 99.4 GSM265473 Arabidopsis, whole roots, -Fe, 72 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 4e-15 83 At3g56760 824843 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane, membrane;MOPFBVA C.G. S.X.
0.14 7e-14 79 At3g19100 821445 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.09 4e-12 73 At3g50530 824217 CRK (CDPK-related kinase) CDPK-related kinase C.G. S.X.
0.13 4e-9 63 At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.14 4e-9 63 At3g49370 824099 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.09 1e-6 56 At2g41140 818713 CRK1 (CDPK-RELATED KINASE 1) Encodes CDPK-related kinase 1 (CRK1). C.G. S.X.
0.04 4e-3 44 At1g49580 841382 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.01 1e-2 42 At3g10660 820235 CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%. C.G. S.X.
0.03 1e-2 42 At1g50700 841492 CPK33 member of Calcium Dependent Protein Kinase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 1e-9 65 Glycine max Gma.17975.2.S1_at BQ628976 - - 2e-29 At3g50530 CRK (CDPK-related kinase) C.G. S.X.
0.15 2e-15 83 Hordeum vulgare Contig16466_at Contig16466 - - 4e-15 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.21 1e-25 119 Oryza sativa Os.20211.1.S1_at - - - 0 C.G. S.X.
0.24 5e-37 157 Populus trichocarpa PtpAffx.210312.1.S1_at pmrna20295 CPK related kinase 4 - 1e-18 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.11 2e-4 48 Triticum aestivum TaAffx.64084.1.S1_at BJ316057 - - 7e-5 At2g41140 CRK1 (CDPK-RELATED KINASE 1) C.G. S.X.
0.25 2e-27 123 Vitis vinifera 1610570_at CA807939 hypothetical protein LOC100246879 - 2e-24 At5g24430 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
0.20 3e-17 89 Zea mays Zm.42.1.S1_at D84508.1 CDPK-related protein kinase - 9e-17 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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