Gene omics information

Query gene ID At2g46500
Gene name phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5673.0At2g46500819260phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:protein modification process;C:cellular_component unknown;MPOFVBS.X.H.G.
0.7083.5At4g20880827836ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)F:unknown;P:unknown;C:nucleus;OMFBPVAS.X.H.G.
0.6982.9At4g20380827786zinc finger protein (LSD1)LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challengeS.X.H.G.
0.6882.2At3g47080823861bindingF:binding;P:unknown;C:unknown;PBOAMS.X.H.G.
0.6882.2At3g48780824039SPT1 (SERINE PALMITOYLTRANSFERASE 1)Encodes one of the two LCB2 subunits (LCB2a and LCB2b) of serine palmitoyltransferase, an enzyme involved in sphingolipid biosynthesis. LCB2a and LCB2b are functional redundant. Double mutants are gametophytic lethal.S.X.H.G.
0.6781.6At1g06700837180serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.6781.6At1g15350838104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.6680.1At5g61960836317AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.S.X.H.G.
0.6478.9At3g55430824709glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;PFOBS.X.H.G.
0.6378.1At3g14595820686unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
106.099.9E-MEXP-285-raw-cel-440782725
101.899.9E-MEXP-285-raw-cel-440782791
93.099.9E-ATMX-35-raw-cel-1574334880
86.599.9E-ATMX-35-raw-cel-1574334864
74.399.9E-ATMX-35-raw-cel-1574334848
72.499.9GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
59.499.8GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
53.899.8E-MEXP-1138-raw-cel-1432772938
44.699.8GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
44.299.8GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.092e-757At1g64460842754phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:vacuole;POMBC.G.S.X.
0.089e-756At5g24240832491phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:protein modification process;C:peroxisome;MPOFVBC.G.S.X.
0.021e-242At1g64470842755ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVBC.G.S.X.
0.012e-138At5g01550831700LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1)Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.C.G.S.X.
0.012e-138At3g24320822021MSH1 (MUTL PROTEIN HOMOLOG 1)Promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation.C.G.S.X.
0.018e-136At5g22990832363zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOC.G.S.X.
0.018e-136At4g04180825733AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion;BOMFPAVC.G.S.X.
0.018e-136At4g34370829587ARI1 (ARIADNE)F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.131e-346Glycine maxGmaAffx.91547.1.S1_atCF807272--3e-4At2g46500phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinC.G.S.X.
0.073e-550Hordeum vulgareContig2297_atContig2297--7e-5At2g46500phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinC.G.S.X.
0.083e-552Oryza sativaOs06g0340600AK100224.1-Phosphatidylinositol 3- and 4-kinase domaincontaining protein2e-5At2g46500phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinC.G.S.X.
0.115e-1273Populus trichocarpaPtpAffx.83113.2.S1_a_atDN500467hypothetical protein-1e-12At2g46500phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinC.G.S.X.
0.074e-654Triticum aestivumTa.14434.1.S1_atCK193800--6e-6At2g46500phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinC.G.S.X.
0.097e-857Vitis vinifera1618048_atCF516513hypothetical protein LOC100264030-3e-11At1g64460phosphatidylinositol 3- and 4-kinase family proteinC.G.S.X.
0.072e-240Zea maysZm.2346.1.A1_a_atAW355940hypothetical protein LOC100274207 /// phosphatidylinositol 3- and 4-kinase family protein-2e-15At1g64460phosphatidylinositol 3- and 4-kinase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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