CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g46360

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g46360 819243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At3g13660 820570 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cellular_component unknown;P S.X. H.G.
0.42 53.9 At1g54070 841845 dormancy/auxin associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.40 50.8 At4g24640 828566 APPB1 Encodes AppB protein (AppB1). S.X. H.G.
0.38 46.7 At1g49490 841373 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPOFVA S.X. H.G.
0.33 38.1 At1g51240 841547 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.31 33.8 At2g26850 817226 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO S.X. H.G.
0.21 15.8 At5g46770 834720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
323.5 100.0 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
315.5 100.0 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
252.2 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
192.9 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
177.2 100.0 E-MEXP-1138-raw-cel-1432772714
176.2 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
159.5 99.9 E-MEXP-1138-raw-cel-1432773226
156.5 99.9 E-MEXP-1138-raw-cel-1432772554
149.9 99.9 E-MEXP-1138-raw-cel-1432772682
144.0 99.9 E-MEXP-1138-raw-cel-1432772586
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-3 40 At3g29340 822592 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF C.G. S.X.
0.02 4e-2 38 At3g16270 820873 - F:unknown;P:intracellular protein transport;C:membrane;MOPBF C.G. S.X.
0.04 1e-1 36 At5g27580 832818 AGL89 F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P C.G. S.X.
0.03 1e-1 36 At1g68460 843175 ATIPT1 (isopentenyltransferase 1) Encodes a putative adenylate isopentenyltransferase which catalyzes the formation of isopentenyladenosine 5'-monophosphate (iPMP) from AMP and dimethylallylpyrophosphate (DMAPP). Involved in cytokinin biosynthesis. C.G. S.X.
0.03 1e-1 36 At1g29000 839774 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:unknown;MOFBPVA C.G. S.X.
0.03 1e-1 36 At1g54460 841888 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB C.G. S.X.
0.02 6e-1 34 At5g51140 835188 pseudouridine synthase family protein F:pseudouridine synthase activity;P:pseudouridine synthesis;C:cellular_component unknown;BOMFPA C.G. S.X.
0.02 6e-1 34 At5g45120 834548 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO C.G. S.X.
0.03 6e-1 34 At4g17483 827461 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-1 34 Glycine max GmaAffx.54802.1.S1_at BI425255 - - 6e-2 At5g47170 unknown protein C.G. S.X.
0.05 4e+0 30 Hordeum vulgare HW02J14u_at HW02J14u - - 3e+0 At4g29710 phosphodiesterase/nucleotide pyrophosphatase-related C.G. S.X.
0.07 3e-1 36 Oryza sativa OsAffx.6354.1.S1_at - - - 0 C.G. S.X.
0.06 8e-1 34 Populus trichocarpa PtpAffx.224440.1.S1_at pmrna42978 hypothetical protein - 3e-2 At3g62940 OTU-like cysteine protease family protein C.G. S.X.
0.04 2e+0 32 Triticum aestivum TaAffx.78940.1.S1_at CA724277 - - 3e+0 At2g31018 unknown protein C.G. S.X.
0.05 2e-1 34 Vitis vinifera 1611479_at CD799903 heterogeneous nuclear ribonucleoprotein-like - 2e-1 At3g27200 plastocyanin-like domain-containing protein C.G. S.X.
0.08 1e+1 28 Zea mays ZmAffx.262.1.A1_s_at AI670379 acidic ribosomal protein P3 - 3e+0 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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