CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g46140

Gene name late embryogenesis abundant protein, putative / LEA protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g46140 819221 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy, response to desiccation;C:plasma membrane;PBO S.X. H.G.
0.67 81.6 At4g26470 828753 calcium ion binding F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFB S.X. H.G.
0.09 2.8 At5g57740 835882 XBAT32 ubiquitin ligase S.X. H.G.
0.07 1.9 At1g63220 842627 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.03 0.6 At4g23885 828488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
114.6 99.9 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
102.3 99.9 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
100.5 99.9 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
78.2 99.9 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
74.5 99.9 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
62.3 99.8 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
59.7 99.8 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
47.2 99.8 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
47.0 99.8 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
45.8 99.8 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 6e-2 38 At3g53200 824486 AtMYB27 (myb domain protein 27) Member of the R2R3 factor gene family. C.G. S.X.
0.01 2e-1 36 At3g51480 824311 ATGLR3.6 (GLUTAMATE RECEPTOR 3.6) member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.07 2e-1 36 At1g01470 837071 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. C.G. S.X.
0.01 1e+0 34 At3g04110 819566 GLR1.1 (GLUTAMATE RECEPTOR 1.1) putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. C.G. S.X.
0.03 1e+0 34 At3g62070 825380 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+0 34 At2g28100 817355 ATFUC1 (alpha-L-fucosidase 1) Encodes a protein with α-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFUC1 was not able to act on XXFG substrates, at least when heterologously expressed in Pichia pastoris. The enzyme has been postulated to act on fucosylated substrates other than xyloglucan oligosaccharides. was shown (Pichia pastoris) to hydrolyze fucose in 3- and 4-linkage , hence was characterized as alpha-L-3,4-fucosidase C.G. S.X.
0.02 1e+0 34 At2g30250 817575 WRKY25 member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-3 42 Glycine max GmaAffx.93598.1.S1_at CF809323 hypothetical LOC547837 - 4e-3 At2g46140 late embryogenesis abundant protein, putative / LEA protein, putative C.G. S.X.
0.03 7e+0 30 Hordeum vulgare HVSMEb0005E16r2_at HVSMEb0005E16r2 - - 1e+0 At1g14290 SBH2 (SPHINGOID BASE HYDROXYLASE 2) C.G. S.X.
0.04 5e-1 36 Oryza sativa OsAffx.19732.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.217932.1.S1_s_at pmrna33399 hypothetical protein - 2e+0 At2g46140 late embryogenesis abundant protein, putative / LEA protein, putative C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.38839.1.S1_at BJ208672 - - 3e+0 At3g17261 unknown protein C.G. S.X.
0.03 7e-2 36 Vitis vinifera 1621530_at CF403816 hypothetical protein LOC100241458 - 3e-1 At2g46140 late embryogenesis abundant protein, putative / LEA protein, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.13298.1.A1_at CO519872 rab GDP dissociation inhibitor alpha - 2e-19 At5g09550 RAB GDP-dissociation inhibitor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009269 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water.
C GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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