Gene omics information

Query gene ID At2g46020
Gene name transcription regulatory protein SNF2, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At2g46020819210transcription regulatory protein SNF2, putativeEncodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.S.X.H.G.
0.7586.9At3g23900821973RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.4355.3At1g24706839081unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.3643.6At3g17450821009hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFBS.X.H.G.
0.2522.6At2g35630818131MOR1 (MICROTUBULE ORGANIZATION 1)Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
27.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
26.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-656At2g13370815823CHR5 (chromatin remodeling 5)F:chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;OMBFPVAC.G.S.X.
0.001e-554At2g28290817375SYD (SPLAYED)Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.C.G.S.X.
0.002e-450At5g44800834510CHR4 (CHROMATIN REMODELING 4)F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVAC.G.S.X.
0.012e-450At2g30390817589FC2 (FERROCHELATASE 2)Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromesC.G.S.X.
0.011e-244At5g15080831360protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.015e-242At5g23100832374unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.039e-1791Glycine maxGmaAffx.41901.1.S1_atBM525755--4e-18At2g46020transcription regulatory protein SNF2, putativeC.G.S.X.
0.011e-140Hordeum vulgareContig9528_atContig9528--9e-4At5g39990glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinC.G.S.X.
0.012e-657Oryza sativaOs05g0150300AK100732.1-Possible global transcription activator SNF2L11e-125At5g18620CHR17 (CHROMATIN REMODELING FACTOR17)C.G.S.X.
0.165e-114414Populus trichocarpaPtp.509.1.S1_atCV230885chromatin remodeling complex subunit-4e-115At2g46020transcription regulatory protein SNF2, putativeC.G.S.X.
0.072e-20103Triticum aestivumTaAffx.91426.1.A1_atBJ319043--4e-25At2g46020transcription regulatory protein SNF2, putativeC.G.S.X.
0.041e-30135Vitis vinifera1618331_atCF208850hypothetical protein LOC100249945-6e-2At2g32487unknown proteinC.G.S.X.
0.011e-346Zea maysZm.10239.1.S1_atAF461813.1chromatin complex subunit A101-5e-25At5g66750CHR1 (CHROMATIN REMODELING 1)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0010199The process by which boundaries between lateral organs and the meristem is established and maintained.
XGO:0040029Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
SGO:0043044Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

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