CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g45970

Gene name CYP86A8

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g45970 819205 CYP86A8 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. S.X. H.G.
0.67 81.6 At1g01610 839297 GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4) Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8. S.X. H.G.
0.36 43.6 At3g55360 824702 CER10 Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport. S.X. H.G.
0.36 43.6 At4g21750 828263 ATML1 (MERISTEM LAYER 1) Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. S.X. H.G.
0.25 22.6 At5g19290 832049 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:cellular_component unknown;BPOMFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.4 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
12.7 99.3 GSM318624 Apex_octa_18DAS_1 GSE12691 Knockdown and overexpression of CIN-TCP genes
12.3 99.3 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
10.6 99.2 E-MEXP-828-raw-cel-1156922659
10.6 99.2 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.0 99.2 GSM131595 ATGE_37_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.0 99.2 GSM131628 ATGE_57_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.6 99.1 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.5 99.1 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.3 99.1 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 2e-57 224 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. C.G. S.X.
0.47 3e-43 176 At4g00360 828019 CYP86A2 (CYTOCHROME P450 86 A2) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. C.G. S.X.
0.29 1e-14 81 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. C.G. S.X.
0.03 1e-5 52 At4g39490 3770599 CYP96A10 member of CYP96A C.G. S.X.
0.02 5e-5 50 At1g57750 842150 CYP96A15 (CYTOCHROME P450 96 A1) Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis. C.G. S.X.
0.01 8e-4 46 At2g21910 816727 CYP96A5 member of CYP96A C.G. S.X.
0.02 3e-3 44 At5g51900 835265 cytochrome P450 family F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;PFBMOA C.G. S.X.
0.03 3e-3 44 At4g39480 830103 CYP96A9 (CYTOCHROME P450 96 A9) member of CYP96A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-23 111 Glycine max Gma.11025.1.S1_at CD390437 - - 2e-23 At2g45970 CYP86A8 C.G. S.X.
0.05 3e-8 59 Hordeum vulgare Contig6865_at Contig6865 - - 2e-7 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
0.08 7e-6 54 Oryza sativa Os01g0854800 AK109676.1 - Cytochrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI)(P450-dependent fatty acid omega-hydroxylase) 3e-10 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
0.28 4e-34 147 Populus trichocarpa PtpAffx.211547.1.S1_at pmrna22630 cytochrome P450 - 5e-42 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
0.04 6e-8 59 Triticum aestivum Ta.254.1.S1_s_at AF123609.1 - - 2e-2 At1g01600 CYP86A4 C.G. S.X.
0.04 4e+0 32 Vitis vinifera 1621973_at CF212141 - - 8e+0 At5g24593 unknown protein C.G. S.X.
0.08 6e-9 61 Zea mays Zm.2032.1.S1_at AW566370 F-box protein interaction domain containing protein - 2e-12 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006631 The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00039 Cutin biosynthesis
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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