Gene omics information

Query gene ID At2g45840
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At2g45840819192-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOVS.X.H.G.
0.9396.4At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.8089.8At1g24540839069CYP86C1member of CYP86CS.X.H.G.
0.8089.8At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOS.X.H.G.
0.7284.8At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POS.X.H.G.
0.7284.8At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.7284.8At4g32170829349CYP96A2member of CYP96AS.X.H.G.
0.6982.9At2g38900818474serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.S.X.H.G.
0.6982.9At1g17260838297AHA10 (Autoinhibited H(+)-ATPase isoform 10)belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification processS.X.H.G.
0.6579.6At3g20520821598SVL3 (SHV3-LIKE 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
600.6100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
442.9100.0GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
263.0100.0GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
253.8100.0GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
158.999.9GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
154.699.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
149.899.9GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
128.599.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
122.499.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
120.299.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.354e-30133At3g61280825300-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOVC.G.S.X.
0.096e-2099At2g45830819191DTA2 (DOWNSTREAM TARGET OF AGL15 2)F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOVBC.G.S.X.
0.216e-1479At3g61290825301-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOVC.G.S.X.
0.063e-963At1g63420842648-F:unknown;P:biological_process unknown;C:unknown;MPFBOVC.G.S.X.
0.091e-552At3g48980824059-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOVC.G.S.X.
0.031e-552At1g67050843025unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBVC.G.S.X.
0.042e-448At3g61270825299-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.047e-240Glycine maxGmaAffx.73446.1.S1_atBI975017--3e+0At5g05910zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.034e-136Hordeum vulgareHF21N04r_atHF21N04r--2e+0At4g19150ankyrin repeat family proteinC.G.S.X.
0.062e-346Oryza sativaOs02g0642700AK108580.1-Arabidopsis thaliana protein of unknown functionDUF821 family protein2e-7At5g23850-C.G.S.X.
0.141e-21105Populus trichocarpaPtpAffx.202206.1.S1_atpmrna4421hypothetical protein-8e-22At2g45840-C.G.S.X.
0.052e-138Triticum aestivumTa.7222.1.A1_atBJ322973--3e-5At2g45830DTA2 (DOWNSTREAM TARGET OF AGL15 2)C.G.S.X.
0.071e-654Vitis vinifera1610959_atCD720524hypothetical protein LOC100263719-4e-7At2g45830DTA2 (DOWNSTREAM TARGET OF AGL15 2)C.G.S.X.
0.023e-136Zea maysZm.5985.2.S1_atAY104529.1Hypothetical protein LOC100217272-2e-34At3g51270ATP binding / catalytic/ protein serine/threonine kinaseC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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