Gene omics information

Query gene ID At2g45810
Gene name DEAD/DEAH box helicase, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At2g45810819189DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAVS.X.H.G.
0.5166.3At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)S.X.H.G.
0.4355.3At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBS.X.H.G.
0.4152.4At2g20990816633SYTA (SYNAPTOTAGMIN A)Encodes a plasma membrane localized protein with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage.S.X.H.G.
0.4050.8At2g28390817387SAND family proteinF:unknown;P:unknown;C:chloroplast;MFOBPAVS.X.H.G.
0.3948.4At1g71900843521-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBS.X.H.G.
0.3948.4At1g79870844326oxidoreductase family proteinF:in 6 functions;P:metabolic process;C:unknown;BOFMPAVS.X.H.G.
0.3948.4At5g08530830752CI51 (51 kDa subunit of complex I)F:4 iron, 4 sulfur cluster binding, NAD or NADH binding, FMN binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH;P:mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;OBMFPAS.X.H.G.
0.3846.7At5g10560830921glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAMS.X.H.G.
0.3846.7At5g63870836507PP7 (SERINE/THREONINE PHOSPHATASE 7)Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.098.9GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
7.398.8GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
6.798.7GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
6.498.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
6.398.6GSM244443Arabidopsis wild-type_T0 (not inoculated)_biological rep2_exp2GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
6.098.5GSM318621Apex_mir-3TCP_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
5.798.4GSM133906Yang_1-11_CPR5NPR1SVI1-1_Rep1_ATH1GSE5745Mutant array
5.698.4GSM62705arf6 arf8_stemGSE2848Auxin Response Factor mediated flower gene expression
5.598.3GSM318618Apex_Col_14DAS_1GSE12691Knockdown and overexpression of CIN-TCP genes
5.298.2GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.7001209At3g61240825296DEAD/DEAH box helicase, putative (RH12)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:unknown;OBMFPAVC.G.S.X.
0.508e-78291At4g00660828042DEAD/DEAH box helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:unknown;BOMFPAVC.G.S.X.
0.015e-240At5g26742832713emb1138 (embryo defective 1138)F:in 6 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast stroma, membrane;BOMFPAVC.G.S.X.
0.022e-138At3g21590821713-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.018e-136At3g06140819787zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBAC.G.S.X.
0.018e-136At2g34730818038myosin heavy chain-relatedF:unknown;P:unknown;C:mitochondrion;MOBFPAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.418e-82305Glycine maxGma.10855.1.S1_a_atBU550914--1e-129At4g00660DEAD/DEAH box helicase, putativeC.G.S.X.
0.257e-46184Hordeum vulgareContig11120_atContig11120--2e-53At3g61240DEAD/DEAH box helicase, putative (RH12)C.G.S.X.
0.405e-62240Oryza sativaOs10g0503700AK059398.1-RNA helicase4e-62At2g45810DEAD/DEAH box helicase, putativeC.G.S.X.
0.479e-91335Populus trichocarpaPtp.3374.1.S1_atBU814452hypothetical protein-4e-114At4g00660DEAD/DEAH box helicase, putativeC.G.S.X.
0.201e-27125Triticum aestivumTaAffx.10805.1.S1_atBQ168937--1e-39At4g00660DEAD/DEAH box helicase, putativeC.G.S.X.
0.219e-35147Vitis vinifera1606771_atCF517362--3e-39At4g00660DEAD/DEAH box helicase, putativeC.G.S.X.
0.175e-34145Zea maysZm.12922.1.A1_atCA402545ATP-dependent RNA helicase dhh1-3e-43At4g00660DEAD/DEAH box helicase, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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