CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g45810

Gene name DEAD/DEAH box helicase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g45810 819189 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAV S.X. H.G.
0.51 66.3 At1g13320 837892 PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) S.X. H.G.
0.43 55.3 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB S.X. H.G.
0.41 52.4 At2g20990 816633 SYTA (SYNAPTOTAGMIN A) Encodes a plasma membrane localized protein with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage. S.X. H.G.
0.40 50.8 At2g28390 817387 SAND family protein F:unknown;P:unknown;C:chloroplast;MFOBPAV S.X. H.G.
0.39 48.4 At1g71900 843521 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB S.X. H.G.
0.39 48.4 At1g79870 844326 oxidoreductase family protein F:in 6 functions;P:metabolic process;C:unknown;BOFMPAV S.X. H.G.
0.39 48.4 At5g08530 830752 CI51 (51 kDa subunit of complex I) F:4 iron, 4 sulfur cluster binding, NAD or NADH binding, FMN binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH;P:mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;OBMFPA S.X. H.G.
0.38 46.7 At5g10560 830921 glycosyl hydrolase family 3 protein F:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAM S.X. H.G.
0.38 46.7 At5g63870 836507 PP7 (SERINE/THREONINE PHOSPHATASE 7) Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.0 98.9 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
7.3 98.8 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.7 98.7 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.4 98.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
6.3 98.6 GSM244443 Arabidopsis wild-type_T0 (not inoculated)_biological rep2_exp2 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
6.0 98.5 GSM318621 Apex_mir-3TCP_14DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
5.7 98.4 GSM133906 Yang_1-11_CPR5NPR1SVI1-1_Rep1_ATH1 GSE5745 Mutant array
5.6 98.4 GSM62705 arf6 arf8_stem GSE2848 Auxin Response Factor mediated flower gene expression
5.5 98.3 GSM318618 Apex_Col_14DAS_1 GSE12691 Knockdown and overexpression of CIN-TCP genes
5.2 98.2 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 0 1209 At3g61240 825296 DEAD/DEAH box helicase, putative (RH12) F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:unknown;OBMFPAV C.G. S.X.
0.50 8e-78 291 At4g00660 828042 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:unknown;BOMFPAV C.G. S.X.
0.01 5e-2 40 At5g26742 832713 emb1138 (embryo defective 1138) F:in 6 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast stroma, membrane;BOMFPAV C.G. S.X.
0.02 2e-1 38 At3g21590 821713 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 8e-1 36 At3g06140 819787 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBA C.G. S.X.
0.01 8e-1 36 At2g34730 818038 myosin heavy chain-related F:unknown;P:unknown;C:mitochondrion;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 8e-82 305 Glycine max Gma.10855.1.S1_a_at BU550914 - - 1e-129 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.25 7e-46 184 Hordeum vulgare Contig11120_at Contig11120 - - 2e-53 At3g61240 DEAD/DEAH box helicase, putative (RH12) C.G. S.X.
0.40 5e-62 240 Oryza sativa Os10g0503700 AK059398.1 - RNA helicase 4e-62 At2g45810 DEAD/DEAH box helicase, putative C.G. S.X.
0.47 9e-91 335 Populus trichocarpa Ptp.3374.1.S1_at BU814452 hypothetical protein - 4e-114 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.20 1e-27 125 Triticum aestivum TaAffx.10805.1.S1_at BQ168937 - - 1e-39 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.21 9e-35 147 Vitis vinifera 1606771_at CF517362 - - 3e-39 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
0.17 5e-34 145 Zea mays Zm.12922.1.A1_at CA402545 ATP-dependent RNA helicase dhh1 - 3e-43 At4g00660 DEAD/DEAH box helicase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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