Gene omics information

Query gene ID At2g45670
Gene name calcineurin B subunit-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g45670819175calcineurin B subunit-relatedF:calcium ion binding, acyltransferase activity;P:metabolic process;C:unknown;MPBOFS.X.H.G.
0.4152.4At3g02750820909protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:chloroplast;PMOFBVS.X.H.G.
0.4050.8At5g04550830334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBS.X.H.G.
0.3541.6At3g46510823804PUB13 (PLANT U-BOX 13)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.S.X.H.G.
0.2217.5At5g11700831042glycine-rich proteinF:unknown;P:unknown;C:vacuole;BMOPFVAS.X.H.G.
0.2217.5At5g56140835713KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPBOFVAS.X.H.G.
0.2014.4At1g04140839272transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPAS.X.H.G.
0.1912.7At4g38360829993unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPFOS.X.H.G.
0.1811.4At4g14160827055transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPS.X.H.G.
0.1710.2At3g26935822311zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
31.499.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
19.899.6GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
17.099.5GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
16.699.5GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.099.4GSM25316648h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
13.599.4GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.499.4GSM25316424h into an extended nightCGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
12.999.3GSM2531618h into an extended nightAGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
12.899.3GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.899.3GSM38670DSNPGSE2268Arabidopsis polysome microarray
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At1g688908432222-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate bindingHomologous to the four eubacterial men genes involved in menanoquinone biosynthesis. Studies of mutants defective in this gene demonstrated its involvement in phylloquinone biosynthesis in Arabidopsis.C.G.S.X.
0.018e-136At5g66750836808CHR1 (CHROMATIN REMODELING 1)Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.C.G.S.X.
0.028e-136At5g44420834469PDF1.2Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.C.G.S.X.
0.028e-136At5g44430834470PDF1.2c (plant defensin 1.2c)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.C.G.S.X.
0.028e-136At2g26010817142PDF1.3 (plant defensin 1.3)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.C.G.S.X.
0.018e-136At2g29190817468APUM2 (Arabidopsis Pumilio 2)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPBC.G.S.X.
0.018e-136At2g46400819248WRKY46member of WRKY Transcription Factor; Group IIIC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.203e-38161Glycine maxGmaAffx.67035.1.S1_atBE058381--5e-39At2g45670calcineurin B subunit-relatedC.G.S.X.
0.024e-136Hordeum vulgareContig16536_atContig16536--5e+0At3g08690UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)C.G.S.X.
0.149e-30133Oryza sativaOs06g0712300AK058857.1-Phospholipid/glycerol acyltransferase familyprotein6e-30At2g45670calcineurin B subunit-relatedC.G.S.X.
0.174e-28127Populus trichocarpaPtpAffx.65166.1.S1_atCF236024hypothetical protein-2e-28At2g45670calcineurin B subunit-relatedC.G.S.X.
0.028e-136Triticum aestivumTa.8157.2.S1_a_atCA684839--3e+0At2g05360-C.G.S.X.
0.111e-240Vitis vinifera1621646_atCB004977hypothetical protein LOC100262557-3e-2At2g45670calcineurin B subunit-relatedC.G.S.X.
0.023e-136Zea maysZm.1604.1.S1_atBF728928--4e+0At5g05650-C.G.S.X.
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Biological processes



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ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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