Gene omics information

Query gene ID At2g45660
Gene name AGL20 (AGAMOUS-LIKE 20)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At2g45660819174AGL20 (AGAMOUS-LIKE 20)Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.S.X.H.G.
0.4050.8At4g09760826564choline kinase, putativeencodes a choline synthase whose gene expression is induced by high salt and mannitol.S.X.H.G.
0.040.9At2g22540816787SVP (SHORT VEGETATIVE PHASE)Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.S.X.H.G.
0.010.2At1g75410843877BLH3 (BEL1-LIKE HOMEODOMAIN 3)BEL1-like homeodomain 3 (BLH3)S.X.H.G.
0.010.2At1g05805837090basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cytosol;PMOFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.399.8GSM142643MC002_ATH1_A7.3-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
50.399.8E-MEXP-509-raw-cel-829148703
48.699.8GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
45.999.8GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
38.199.8E-MEXP-98-raw-cel-320188694
37.899.8GSM142632MC002_ATH1_A4.1-dubos-6kcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
35.799.7GSM133754Turner_A-8-Turne-WT-Base2_SLDGSE5729Role of COV in vascular patterning
35.399.7GSM142627MC002_ATH1_A2.2-dubos-wtcGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.399.7E-MEXP-148-raw-cel-350529179
31.499.7GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.238e-36151At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.C.G.S.X.
0.174e-28125At5g62165836337AGL42 (AGAMOUS LIKE 42)Encodes a MADS box transcription factor. Expressed in quiescent center.C.G.S.X.
0.224e-22105At4g22950828394AGL19 (AGAMOUS-LIKE 19)MADS-box protein AGL19C.G.S.X.
0.122e-1583At2g45650819173AGL6 (AGAMOUS-LIKE 6)sequence suggests this encodes a MADS-box transcription factorC.G.S.X.
0.129e-1167At3g61120825284AGL13 (AGAMOUS-LIKE 13)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOC.G.S.X.
0.073e-1065At2g14210815907AGL44 (AGAMOUS-LIKE 44)MADS box gene, transcription factorC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.158e-1271Glycine maxGma.16618.1.S1_atBE330897SOC1-4e-12At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.032e+032Hordeum vulgareContig12204_s_atContig12204--4e+0At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.036e-136Oryza sativaOsAffx.25188.1.S1_at---0C.G.S.X.
0.171e-1067Populus trichocarpaPtpAffx.56981.3.S1_atCV242364MIKC mads-box transcription factor SOC1-4e-23At4g11880AGL14 (agamous-like 14)C.G.S.X.
0.119e-857Triticum aestivumTa.25343.1.A1_atCD374116MADS-box transcription factor TaAGL7-1e-7At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.113e-548Vitis vinifera1615524_atCA810708MADS-box protein-7e-5At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.042e+032Zea maysZmAffx.775.1.A1_atAI746211S-ribonuclease binding protein SBP1-8e-1At4g32480unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009911Any process that activates or increases the frequency, rate or extent of flower development.
SGO:0009908The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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