Gene omics information

Query gene ID At2g45650
Gene name AGL6 (AGAMOUS-LIKE 6)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At2g45650819173AGL6 (AGAMOUS-LIKE 6)sequence suggests this encodes a MADS-box transcription factorS.X.H.G.
0.8994.6At2g36190818191AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAS.X.H.G.
0.8089.8At3g28007822424nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBS.X.H.G.
0.7586.9At3g25810822173myrcene/ocimene synthase, putativeF:in 7 functions;P:monoterpene biosynthetic process;C:plastid;POS.X.H.G.
0.6781.6At2g39060818492nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
651.7100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
227.6100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
183.8100.0E-MEXP-1474-raw-cel-1593932481
180.9100.0E-MEXP-1474-raw-cel-1593932673
154.499.9E-MEXP-1474-raw-cel-1593932513
144.099.9E-MEXP-1474-raw-cel-1593932577
118.499.9E-MEXP-1474-raw-cel-1593932705
114.999.9E-MEXP-1474-raw-cel-1593932609
102.099.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.599.9GSM10445WT 24-Hr Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.202e-39163At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoC.G.S.X.
0.192e-37157At2g03710814898SEP4 (SEPALLATA 4)This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.C.G.S.X.
0.199e-33141At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.C.G.S.X.
0.195e-31135At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.C.G.S.X.
0.528e-30131At3g61120825284AGL13 (AGAMOUS-LIKE 13)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.213e-1893Glycine maxGmaAffx.70788.1.S1_atAI959798--8e-35At2g03710SEP4 (SEPALLATA 4)C.G.S.X.
0.167e-444Hordeum vulgareContig2200_s_atContig2200--2e-3At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.149e-1375Oryza sativaOs09g0507200U78892.1-MADS box protein1e-20At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.231e-23111Populus trichocarpaPtpAffx.213045.1.S1_atpmrna25528hypothetical protein-5e-24At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.091e-448Triticum aestivumTa.14469.3.S1_a_atBJ276784MADS-box transcription factor TaAGL16-3e-5At3g61120AGL13 (AGAMOUS-LIKE 13)C.G.S.X.
0.184e-23107Vitis vinifera1609046_atCB971729hypothetical protein LOC100256085-1e-13At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.143e-342Zea maysZm.14912.1.S1_atBQ703314Zea mays MADS7-1e-2At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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