CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g45220

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At2g45220 819130 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM S.X. H.G.
0.20 14.4 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family S.X. H.G.
0.12 4.9 At1g30700 839950 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA S.X. H.G.
0.06 1.4 At1g32940 840188 SBT3.5 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM S.X. H.G.
0.05 1.1 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
135.0 99.9 E-MEXP-1094-raw-cel-1379507313
110.0 99.9 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
107.9 99.9 GSM142848 MG001_ATH1_A29-Torres-9N3 GSE6176 Impact of Type III effectors on plant defense responses
94.4 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
92.9 99.9 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
85.7 99.9 GSM142845 MG001_ATH1_A26-Torres-8N3 GSE6176 Impact of Type III effectors on plant defense responses
83.6 99.9 GSM128719 Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
75.8 99.9 E-MEXP-1094-raw-cel-1379507273
71.5 99.9 E-MEXP-546-raw-cel-863289424
65.6 99.8 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 9e-10 65 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.04 3e-9 63 At5g53370 835418 PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F) F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMO C.G. S.X.
0.04 1e-8 61 At1g53830 841820 ATPME2 encodes a pectin methylesterase C.G. S.X.
0.03 5e-5 50 At5g20860 832209 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.05 8e-4 46 At3g49220 824083 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.04 8e-4 46 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.03 3e-3 44 At4g02330 828064 ATPMEPCRB F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM C.G. S.X.
0.02 3e-3 44 At3g05610 819727 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-4 48 Glycine max GmaAffx.73180.1.S1_at BI700322 - - 8e-5 At4g00190 pectinesterase family protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig14880_at Contig14880 - - 3e+0 At5g52600 AtMYB82 (myb domain protein 82) C.G. S.X.
0.06 1e-7 59 Oryza sativa Os02g0288100 AK107019.1 - Pectinesterase 6e-8 At2g45220 pectinesterase family protein C.G. S.X.
0.07 7e-2 40 Populus trichocarpa PtpAffx.13217.1.S1_at CK320792 - - 2e-6 At5g53370 PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F) C.G. S.X.
0.05 8e-1 36 Triticum aestivum Ta.15826.2.S1_at BJ213611 - - 2e-1 At2g45220 pectinesterase family protein C.G. S.X.
0.08 2e-7 56 Vitis vinifera 1622450_at CB970586 - - 5e-7 At2g45220 pectinesterase family protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.13938.2.S1_at CK368471 - - 4e-23 At2g19740 60S ribosomal protein L31 (RPL31A) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00040 Pentose and glucuronate interconversions
00500 Starch and sucrose metabolism
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage