Gene omics information

Query gene ID At2g45190
Gene name AFO (ABNORMAL FLORAL ORGANS)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g45190819127AFO (ABNORMAL FLORAL ORGANS)Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).S.X.H.G.
0.8693.1At1g75240843861AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBVS.X.H.G.
0.8693.1At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.S.X.H.G.
0.8089.8At1g14440838006AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOBFS.X.H.G.
0.3338.1At3g61310825303DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
44.499.8E-MEXP-728-raw-cel-1062074361
41.899.8E-MEXP-728-raw-cel-1062074512
38.699.8E-MEXP-682-raw-cel-922397577
37.999.8E-MEXP-728-raw-cel-1062073338
37.799.7E-MEXP-682-raw-cel-922397560
37.599.7GSM131675ATGE_49_CGSE5633AtGenExpress: Developmental series (shoots and stems)
37.299.7E-MEXP-728-raw-cel-1062074684
36.099.7GSM131674ATGE_49_BGSE5633AtGenExpress: Developmental series (shoots and stems)
36.099.7GSM131673ATGE_49_AGSE5633AtGenExpress: Developmental series (shoots and stems)
35.199.7E-MEXP-728-raw-cel-1062074409
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.215e-34145At4g00180827914YAB3 (YABBY3)YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.C.G.S.X.
0.092e-963At2g26580817199YAB5 (YABBY5)F:transcription factor activity;P:regulation of transcription;C:unknown;POFC.G.S.X.
0.142e-550At1g69180843249CRC (CRABS CLAW)Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region.C.G.S.X.
0.042e-240At5g52750835352heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMC.G.S.X.
0.032e-240At2g32710817831KRP4Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells.C.G.S.X.
0.142e-240At1g084653766682YAB2 (YABBY2)Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organsC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.299e-49194Glycine maxGma.12239.1.A1_atCD416578--1e-48At2g45190AFO (ABNORMAL FLORAL ORGANS)C.G.S.X.
0.072e-446Hordeum vulgareContig11568_atContig11568--1e-10At2g26580YAB5 (YABBY5)C.G.S.X.
0.185e-1169Oryza sativaOs07g0160100AK100222.1-YABBY24e-15At1g08465YAB2 (YABBY2)C.G.S.X.
0.311e-35151Populus trichocarpaPtp.5981.1.S1_a_atCK100790hypothetical protein-9e-36At2g45190AFO (ABNORMAL FLORAL ORGANS)C.G.S.X.
0.162e-654Triticum aestivumTa.7227.1.A1_atCK205871--2e-6At2g45190AFO (ABNORMAL FLORAL ORGANS)C.G.S.X.
0.315e-50196Vitis vinifera1612362_atCF372908hypothetical protein LOC100243667-4e-31At4g00180YAB3 (YABBY3)C.G.S.X.
0.127e-1373Zea maysZm.15822.1.S1_atAY313901.1yabby14 protein-4e-5At2g26580YAB5 (YABBY5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010159The regionalization process by which information that determines the correct position at which organ primordia are formed is generated and perceived resulting in correct positioning of the new organ.
XGO:0010158Process by which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
XGO:0009909Any process that modulates the frequency, rate or extent of flower development.
XGO:0009933Organization of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue.
XGO:0010154The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant.
XGO:0045165The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.
CGO:0009944The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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