Gene omics information

Query gene ID At2g45130
Gene name SPX3 (SPX DOMAIN GENE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g45130819120SPX3 (SPX DOMAIN GENE 3)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPOS.X.H.G.
1.00100.0At1g08310837351esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:unknown;BPOMFAS.X.H.G.
1.00100.0At1g17710838347phosphataseF:phosphatase activity;P:metabolic process;C:unknown;MPOBFS.X.H.G.
1.00100.0At2g11810815657MGDCMGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.S.X.H.G.
0.9697.3At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8793.5At1g19200838503senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8391.4At1g73010843632phosphataseF:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBFS.X.H.G.
0.8391.4At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVS.X.H.G.
0.7989.1At3g05630819730PLDP2Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.S.X.H.G.
0.7586.9At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
419.9100.0GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
292.4100.0GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
279.7100.0GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
251.0100.0GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
177.4100.0GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1
154.899.9GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1
152.699.9E-MEXP-791-raw-cel-1122937569
149.399.9E-MEXP-1797-raw-cel-1669768084
147.999.9E-MEXP-1797-raw-cel-1669768012
139.599.9E-ATMX-31-raw-cel-1516947916
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.029e-238At3g29060822550-F:unknown;P:unknown;C:integral to membrane;MFPOVBAC.G.S.X.
0.029e-238At1g63720842676-F:unknown;P:unknown;C:unknown;MPFOVBC.G.S.X.
0.014e-136At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAC.G.S.X.
0.074e-136At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAC.G.S.X.
0.044e-136At2g304323768521TCL1 (TRICHOMELESS1)Encodes TRICHOMELESS1 (TCL1), a single-repeat MYB-type transcription factor that negatively regulates trichome formation by suppressing GL1 (GLABRA1). In a tandem repeat with AT2g30424 and AT2g30420.C.G.S.X.
0.044e-136At2g30420817593ETC2In a tandem repeat with AT2G30424 and AT2G30432C.G.S.X.
0.024e-136At2g27000817242CYP705A8member of CYP705AC.G.S.X.
0.024e-136At2g27010817243CYP705A9member of CYP705AC.G.S.X.
0.034e-136At1g06160837125ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138Glycine maxGma.2764.1.S1_atBE612223MYB transcription factor MYB117-9e-11At1g22640MYB3 (MYB DOMAIN PROTEIN 3)C.G.S.X.
0.032e-136Hordeum vulgareContig18975_atContig18975--4e-1At2g45130SPX3 (SPX DOMAIN GENE 3)C.G.S.X.
0.082e-448Oryza sativaOs06g0603600AK063544.1-Ids4-like protein5e-17At5g20150SPX1 (SPX DOMAIN GENE 1)C.G.S.X.
0.188e-342Populus trichocarpaPtpAffx.1026.1.S1_a_atCK093863hypothetical protein-7e-3At2g45130SPX3 (SPX DOMAIN GENE 3)C.G.S.X.
0.124e-136Triticum aestivumTaAffx.104994.1.S1_atCA646532--3e-8At2g26660SPX2 (SPX DOMAIN GENE 2)C.G.S.X.
0.037e-340Vitis vinifera1622876_atCF209501hypothetical protein LOC100264658-2e-9At2g26660SPX2 (SPX DOMAIN GENE 2)C.G.S.X.
0.036e-134Zea maysZmAffx.137.1.A1_atAI667708Hypothetical protein LOC100192022-8e-1At2g45130SPX3 (SPX DOMAIN GENE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0080040Any process that activates or increases the frequency, rate or extent of cellular response to phosphate starvation.
XGO:0016036A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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