CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g44840

Gene name ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.78 88.6 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV S.X. H.G.
0.65 79.6 At5g51190 835193 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.57 73.8 At3g50930 824257 BCS1 (CYTOCHROME BC1 SYNTHESIS) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV S.X. H.G.
0.56 73.0 At5g52050 835280 MATE efflux protein-related F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAM S.X. H.G.
0.50 65.3 At2g32140 817773 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO S.X. H.G.
0.49 63.5 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
0.47 61.2 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
0.47 61.2 At3g08720 820019 S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins. S.X. H.G.
0.47 61.2 At5g61900 836311 BON1 (BONZAI 1) Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
421.5 100.0 E-MEXP-807-raw-cel-1173273252
398.7 100.0 E-MEXP-807-raw-cel-1173273144
364.9 100.0 E-MEXP-807-raw-cel-1173273196
330.4 100.0 E-MEXP-807-raw-cel-1173273088
291.4 100.0 E-MEXP-807-raw-cel-1173273116
277.0 100.0 E-MEXP-807-raw-cel-1173273170
240.8 100.0 E-MEXP-807-raw-cel-1173273060
164.2 99.9 E-MEXP-807-raw-cel-1173273223
129.7 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
129.3 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 4e-22 105 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.12 6e-18 91 At5g47220 834768 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box�dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. C.G. S.X.
0.06 1e-16 87 At4g17490 827463 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.11 2e-12 73 At2g31230 817680 ATERF15 (Ethylene-responsive element binding factor 15) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.11 6e-9 61 At5g61600 836281 ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.06 6e-9 61 At1g06160 837125 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.03 1e-6 54 At5g47230 834770 ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.06 1e-6 54 At3g61630 825336 CRF6 (CYTOKININ RESPONSE FACTOR 6) CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. C.G. S.X.
0.04 1e-6 54 At1g49120 841335 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-18 93 Glycine max Gma.68.1.S1_at AF357211.1 ethylene-responsive element binding protein 1 - 7e-9 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) C.G. S.X.
0.07 3e-3 42 Hordeum vulgare Contig10472_at Contig10472 - - 9e-3 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.07 7e-4 46 Oryza sativa Os04g0429050 9632.m03363 - - 4e-1 At5g07310 AP2 domain-containing transcription factor, putative C.G. S.X.
0.19 2e-19 97 Populus trichocarpa PtpAffx.221100.1.S1_at pmrna37697 AP2/ERF domain-containing transcription factor - 9e-20 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.04 9e-2 38 Triticum aestivum TaAffx.58893.1.S1_at CA613121 - - 7e-2 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.06 1e-7 56 Vitis vinifera 1613698_at CF403989 hypothetical protein LOC100242632 - 7e-6 At5g51190 AP2 domain-containing transcription factor, putative C.G. S.X.
0.04 9e-3 40 Zea mays Zm.8626.1.A1_at BM348921 hypothetical protein LOC100274398 - 1e+0 At5g61600 ethylene-responsive element-binding family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
S GO:0009873 A series of molecular signals mediated by ethylene (ethene).
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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