CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g44610

Gene name RAB6A

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At2g44610 819069 RAB6A Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. S.X. H.G.
0.67 81.6 At2g20760 816605 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane;MBOPF S.X. H.G.
0.57 73.8 At4g34960 829648 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:Golgi apparatus;BOMFPAV S.X. H.G.
0.40 50.8 At2g20420 816561 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative F:succinate-CoA ligase (GDP-forming) activity, ATP binding;P:response to cadmium ion, metabolic process;C:mitochondrion;OBMFAP S.X. H.G.
0.40 50.8 At2g45060 819113 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMBFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.7 99.4 E-ATMX-31-raw-cel-1516947882
12.7 99.3 E-MEXP-1797-raw-cel-1669768084
12.6 99.3 E-ATMX-31-raw-cel-1516947899
12.4 99.3 E-MEXP-1797-raw-cel-1669768048
11.9 99.3 E-ATMX-31-raw-cel-1516947916
10.9 99.2 E-MEXP-1797-raw-cel-1669767958
10.7 99.2 E-ATMX-13-raw-cel-1556149807
10.6 99.2 E-ATMX-13-raw-cel-1556149919
10.3 99.2 E-MEXP-1797-raw-cel-1669768003
10.2 99.2 E-MEXP-1797-raw-cel-1669768066
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 1e-43 176 At5g10260 830890 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA C.G. S.X.
0.35 1e-31 137 At2g22290 816761 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:mitochondrion;MOFPBVA C.G. S.X.
0.46 7e-30 131 At4g39890 830148 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) F:protein binding, GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endomembrane system;MOFPBVA C.G. S.X.
0.34 2e-8 59 At5g64990 836623 AtRABH1a (Arabidopsis Rab GTPase homolog H1a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:mitochondrion;MOFPBAV C.G. S.X.
0.05 3e-4 46 At1g43890 840987 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) ras-related small GTPase C.G. S.X.
0.03 5e-3 42 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 3e-42 173 Glycine max Gma.3568.2.S1_a_at BM308236 - - 3e-42 At2g44610 RAB6A C.G. S.X.
0.45 3e-67 254 Hordeum vulgare Contig7349_at Contig7349 - - 1e-66 At2g44610 RAB6A C.G. S.X.
0.51 5e-63 242 Oryza sativa OsAffx.16506.1.S1_at - - - 0 C.G. S.X.
0.68 3e-45 182 Populus trichocarpa PtpAffx.205177.1.S1_at pmrna10251 hypothetical protein - 4e-93 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.45 1e-59 230 Triticum aestivum Ta.28749.1.S1_a_at CK213968 - - 2e-59 At2g44610 RAB6A C.G. S.X.
0.54 5e-102 369 Vitis vinifera 1621785_at CF213480 hypothetical protein LOC100242004 - 2e-101 At2g44610 RAB6A C.G. S.X.
0.44 7e-28 123 Zea mays Zm.17714.1.A1_at CF626729 - - 2e-27 At2g44610 RAB6A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0032940 The controlled release of a substance by a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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