CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g44430

Gene name DNA-binding bromodomain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.18 11.4 At2g44430 819050 DNA-binding bromodomain-containing protein F:DNA binding;P:unknown;C:unknown;MOFBPVA S.X. H.G.
0.50 65.3 At3g53350 824503 myosin heavy chain-related F:unknown;P:biological_process unknown;C:nucleus;MOBFPAV S.X. H.G.
0.22 17.5 At5g52410 835317 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOBFPAV S.X. H.G.
0.11 4.1 At4g31270 829254 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOF S.X. H.G.
0.08 2.3 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
373.9 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
354.1 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
248.2 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
189.5 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
185.7 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
170.0 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
153.2 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
145.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
140.3 99.9 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 6e-39 163 At3g60110 825181 DNA binding F:DNA binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 2e-2 42 At2g46850 819298 ATP binding / protein kinase/ protein tyrosine kinase F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOFBV C.G. S.X.
0.01 2e-2 42 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO C.G. S.X.
0.01 6e-2 40 At2g47500 819363 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFP C.G. S.X.
0.02 6e-2 40 At2g42150 818815 DNA-binding bromodomain-containing protein F:DNA binding;P:unknown;C:nucleus;MOFPBV C.G. S.X.
0.01 6e-2 40 At1g61770 842474 DNAJ heat shock N-terminal domain-containing protein J domain protein. C.G. S.X.
0.01 6e-2 40 At1g31460 840036 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPV C.G. S.X.
0.01 2e-1 38 At5g59540 836073 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.20763.1.S1_s_at AW100360 - - 3e+0 At2g33370 60S ribosomal protein L23 (RPL23B) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare EBro08_SQ003_A06_at EBro08_SQ003_A06 - - 1e+0 At2g32190 unknown protein C.G. S.X.
0.02 5e-1 38 Oryza sativa OsAffx.5892.1.S1_at - - - 0 C.G. S.X.
0.03 2e-6 56 Populus trichocarpa PtpAffx.216637.1.S1_at pmrna31548 bromodomain protein - 1e-6 At2g44430 DNA-binding bromodomain-containing protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.28072.1.S1_at BQ838284 - - 2e-27 At5g46430 60S ribosomal protein L32 (RPL32B) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1622266_x_at CF205286.1 - - 5e-3 At4g14690 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6778.2.A1_at AI770701 - - 8e-4 At4g27230 HTA2 (histone H2A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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