CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g44300

Gene name lipid transfer protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At2g44300 819038 lipid transfer protein-related F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P S.X. H.G.
0.57 73.8 At1g23760 838987 JP630 Encodes aromatic rich glycoprotein JP630. S.X. H.G.
0.57 73.8 At3g45700 823712 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF S.X. H.G.
0.40 50.8 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P S.X. H.G.
0.09 2.8 At5g40860 834087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
205.4 100.0 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
160.7 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
125.3 99.9 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
117.7 99.9 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
110.7 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
109.5 99.9 GSM266676 Arabidopsis, root cells, stele, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
102.3 99.9 GSM184634 Arabidopsis, root cells, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
88.4 99.9 GSM184921 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
88.0 99.9 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
87.7 99.9 GSM226550 Slice8JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 666 At2g44290 819037 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P C.G. S.X.
0.02 8e-2 38 At5g58470 835960 TAF15b (TBP-ASSOCIATED FACTOR 15b) F:binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVA C.G. S.X.
0.02 1e+0 34 At4g26100 828716 CK1 (CASEIN KINASE 1) Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization. C.G. S.X.
0.05 1e+0 34 At2g28401 6240373 unknown protein F:unknown;P:unknown;C:unknown C.G. S.X.
0.02 1e+0 34 At2g37590 818336 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFA C.G. S.X.
0.02 1e+0 34 At1g65160 842823 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO C.G. S.X.
0.02 1e+0 34 At1g80170 844357 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max Gma.4395.2.S1_at BM885659 - - 3e+0 At5g66053 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HT14G19r_at HT14G19r - - 4e+0 At2g24395 chaperone protein dnaJ-related C.G. S.X.
0.03 4e-2 40 Oryza sativa Os01g0568200 NM_193588.1 - - 3e+0 At5g12880 proline-rich family protein C.G. S.X.
0.14 1e-10 67 Populus trichocarpa Ptp.3471.2.A1_at DN493069 - - 1e-10 At2g44300 lipid transfer protein-related C.G. S.X.
0.05 3e-4 46 Triticum aestivum Ta.17816.1.S1_at CA624569 - - 2e-4 At2g44300 lipid transfer protein-related C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1617392_at CF511392 hypothetical protein LOC100248515 - 2e+0 At1g51355 unknown protein C.G. S.X.
0.03 1e-4 46 Zea mays Zm.1193.1.A1_at AY104287.1 glycine-rich RNA-binding protein 2 - 1e-1 At4g32850 nPAP (NUCLEAR POLY(A) POLYMERASE) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage