CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g44195

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g44195 819027 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.33 38.1 At4g20790 827827 leucine-rich repeat family protein F:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOVBF S.X. H.G.
0.27 26.2 At5g63720 836492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOFPV S.X. H.G.
0.10 3.4 At1g76910 844026 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.02 0.4 At1g57906 842163 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
416.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
414.8 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
406.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
392.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
386.9 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
357.3 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
330.4 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
325.5 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
319.2 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
311.4 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 4e-12 71 At2g44200 819028 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 6e-2 38 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF C.G. S.X.
0.01 2e-1 36 At5g14990 831351 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV C.G. S.X.
0.01 2e-1 36 At1g58210 842188 EMB1674 (EMBRYO DEFECTIVE 1674) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;MOFBPAV C.G. S.X.
0.01 2e-1 36 At1g69610 843297 structural constituent of ribosome F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFB C.G. S.X.
0.01 9e-1 34 At5g56560 835757 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBO C.G. S.X.
0.02 9e-1 34 At5g49520 835012 WRKY48 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.01 9e-1 34 At4g03430 827925 EMB2770 (EMBRYO DEFECTIVE 2770) Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. C.G. S.X.
0.02 9e-1 34 At2g14920 815981 ST4A (SULFOTRANSFERASE 4A) Encodes a brassinosteroid sulfotransferase that may be involved in brassinosteroid inactivation. In vitro experiements show that this enzyme can act on a broad group of naturally occurring brassinosteroids, including the 24-epimers and (22R,23R)-28 homobrassinosteroids, that have an array of different side chains, though it shows a preference for (22R,23R)-28 homobrassinosteroids. ST4A is expressed in the roots and transcript levels fall in response to cytokinin treatment. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Glycine max GmaAffx.80852.1.S1_at CA853018 - - 5e-18 At3g24840 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEn0014K19r2_at HVSMEn0014K19r2 - - 4e+0 At2g44195 unknown protein C.G. S.X.
0.03 8e-6 52 Oryza sativa Os08g0500200 AK059046.1 - Conserved hypothetical protein 7e-14 At2g44200 unknown protein C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.15642.2.S1_at BU810678 - - 8e-2 At2g40780 RNA binding / translation initiation factor C.G. S.X.
0.05 9e-1 34 Triticum aestivum TaAffx.119946.1.A1_s_at BJ250832 - - 5e+0 At3g46210 3' exoribonuclease family domain 1-containing protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1615337_at CF405202 hypothetical protein LOC100264826 - 1e+0 At2g44195 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.14951.1.S1_x_at M36914.1 cell wall protein (put.); putative - 5e-3 At2g30370 allergen-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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