CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g44100

Gene name ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At2g44100 819016 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) GDP dissociation inhibitor involved in vesicular membrane traffic S.X. H.G.
0.63 78.1 At2g45140 819122 PVA12 (PLANT VAP HOMOLOG 12) Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. S.X. H.G.
0.55 70.6 At1g27000 839590 bZIP family transcription factor F:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POBM S.X. H.G.
0.46 59.8 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. S.X. H.G.
0.46 59.8 At5g61500 836271 ATG3 F:molecular_function unknown;P:autophagy;C:cellular_component unknown;MFOP S.X. H.G.
0.46 59.8 At2g27600 817306 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. S.X. H.G.
0.40 50.8 At5g08290 830725 YLS8 Encodes Dim1 homolog. S.X. H.G.
0.38 46.7 At4g24550 828557 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOP S.X. H.G.
0.32 35.7 At1g71860 843516 PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress. S.X. H.G.
0.32 35.7 At3g09740 820132 SYP71 (SYNTAXIN OF PLANTS 71) syntaxin of plants 71 (SYP71) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 98.6 GSM142640 MC002_ATH1_A6.3-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
6.2 98.6 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.1 98.5 GSM133720 Deeken_A-2-Deeke-Inf_SLD_REP1 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
5.6 98.4 GSM142639 MC002_ATH1_A6.2-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
5.6 98.4 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
5.5 98.3 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
5.5 98.3 E-ATMX-13-raw-cel-1556149903
5.4 98.3 GSM142669 SF002_ATH1_A7-Fille-ANGR4-12nodex GSE6155 Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
5.3 98.3 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
5.2 98.2 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 0 1291 At3g59920 825162 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) RAB GDP DISSOCIATION INHIBITOR 2 C.G. S.X.
0.32 1e-20 101 At5g09550 830814 RAB GDP-dissociation inhibitor F:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 7e-1 36 At5g17040 831567 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF C.G. S.X.
0.01 7e-1 36 At5g17030 831566 UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3) F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF C.G. S.X.
0.01 7e-1 36 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV C.G. S.X.
0.02 7e-1 36 At2g21240 816663 BPC4 (BASIC PENTACYSTEINE 4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMB C.G. S.X.
0.00 3e+0 34 At5g44800 834510 CHR4 (CHROMATIN REMODELING 4) F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 5e-55 216 Glycine max Gma.3626.2.S1_a_at BQ612673 - - 4e-52 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) C.G. S.X.
0.48 6e-52 204 Hordeum vulgare Contig2507_at Contig2507 - - 2e-51 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
0.49 1e-50 202 Oryza sativa Os05g0304400 AF016897.1 - GDP dissociation inhibitor protein OsGDI2 7e-51 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
0.43 3e-96 353 Populus trichocarpa Ptp.1244.1.S1_s_at BP934439 hypothetical protein - 2e-96 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
0.45 4e-58 226 Triticum aestivum Ta.7677.1.S1_x_at CK194882 - - 5e-58 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
0.50 2e-81 301 Vitis vinifera 1616860_at BQ792203 hypothetical protein LOC100261021 - 4e-83 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) C.G. S.X.
0.47 4e-31 135 Zea mays Zm.5495.1.S1_at AY103870.1 - - 1e-30 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0048227 Transport of a vesicle from the plasma membrane to the endosome.
C GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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