Gene omics information

Query gene ID At2g43890
Gene name polygalacturonase, putative / pectinase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g43890818993polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAS.X.H.G.
0.8391.4At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBS.X.H.G.
0.5974.7At3g59850825155polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVS.X.H.G.
0.4659.8At2g24400816976auxin-responsive protein, putative / small auxin up RNA (SAUR_D)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POS.X.H.G.
0.3643.6At1g05650837072polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVS.X.H.G.
0.3338.1At4g01630827983ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
586.1100.0GSM184909Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
278.3100.0GSM184921Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
154.799.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
141.899.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
140.499.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
137.699.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
134.399.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
126.399.9GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
124.599.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
119.799.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.036e-446At4g32375829372glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;MPBOFVAC.G.S.X.
0.036e-446At4g18180827543glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAC.G.S.X.
0.029e-342At5g48140834866polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAC.G.S.X.
0.029e-342At2g43860818990polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAC.G.S.X.
0.039e-342At1g56710842127glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAC.G.S.X.
0.024e-240At3g07850819976exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVAC.G.S.X.
0.024e-240At3g14040820618exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVAC.G.S.X.
0.064e-240At2g43880818992polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVC.G.S.X.
0.024e-240At1g80170844357polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-136Glycine maxGmaAffx.79361.1.S1_atCA785641--3e-1At5g39910glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinC.G.S.X.
0.021e+034Hordeum vulgareContig12475_atContig12475--3e-5At2g43860polygalacturonase, putative / pectinase, putativeC.G.S.X.
0.021e+036Oryza sativaOs.17569.1.S1_at---0C.G.S.X.
0.185e-240Populus trichocarpaPtpAffx.225337.1.S1_x_atpmrna44619hypothetical protein-4e-2At2g43890polygalacturonase, putative / pectinase, putativeC.G.S.X.
0.032e+034Triticum aestivumTaAffx.37950.1.S1_atBJ257594--1e+0At2g43890polygalacturonase, putative / pectinase, putativeC.G.S.X.
0.022e-136Vitis vinifera1618607_s_atCB972339hypothetical protein LOC100255358-1e-3At1g55910ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)C.G.S.X.
0.021e+034Zea maysZm.12331.1.S1_atBM380183--1e-1At3g42310unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00412Link to KaPPA-View 4Glycoside Hydrolase
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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