CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g43800

Gene name formin homology 2 domain-containing protein / FH2 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At2g43800 818984 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA S.X. H.G.
0.77 88.0 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.69 82.9 At5g43020 834317 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.63 78.1 At4g14200 827060 unknown protein F:unknown;P:biological_process unknown;C:unknown;MBOFPA S.X. H.G.
0.61 76.7 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.61 76.7 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV S.X. H.G.
0.60 75.7 At3g05470 819712 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBA S.X. H.G.
0.60 75.7 At4g29360 829057 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane;PFOB S.X. H.G.
0.59 74.7 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.59 74.7 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
66.3 99.8 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
52.5 99.8 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
45.0 99.8 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
35.1 99.7 E-MEXP-682-raw-cel-922397560
31.5 99.7 E-MEXP-682-raw-cel-922397611
31.0 99.7 E-MEXP-682-raw-cel-922397577
30.0 99.7 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
29.6 99.7 E-MEXP-682-raw-cel-922397594
26.6 99.7 E-MEXP-682-raw-cel-922397645
26.5 99.7 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 9e-8 59 At3g05470 819712 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBA C.G. S.X.
0.03 1e-6 56 At5g67470 836883 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:in 7 components;MPOFBVA C.G. S.X.
0.10 6e-6 54 At3g25500 822136 AFH1 (FORMIN HOMOLOGY 1) Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event. C.G. S.X.
0.01 2e-5 52 At1g70140 843350 ATFH8 (formin 8) Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton. C.G. S.X.
0.01 1e-3 46 At4g30350 829158 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM C.G. S.X.
0.01 1e-3 46 At3g19680 821505 unknown protein F:unknown;P:unknown;C:plasma membrane;OPMBF C.G. S.X.
0.01 2e-2 42 At5g49530 835014 SIN-like family protein F:DNA-directed RNA polymerase activity;P:transcription;C:nucleus;MOFPB C.G. S.X.
0.01 2e-2 42 At4g26130 828719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF C.G. S.X.
0.01 2e-2 42 At3g07020 819887 UDP-glucose:sterol glucosyltransferase (UGT80A2) F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-4 48 Glycine max GmaAffx.61549.1.S1_at AI437770 - - 4e-6 At5g67470 formin homology 2 domain-containing protein / FH2 domain-containing protein C.G. S.X.
0.03 7e-4 46 Hordeum vulgare Contig11031_at Contig11031 - - 3e-3 At5g67470 formin homology 2 domain-containing protein / FH2 domain-containing protein C.G. S.X.
0.04 3e-3 46 Oryza sativa Os01g0897700 AK061290.1 - Formin-like protein 2e-37 At3g25500 AFH1 (FORMIN HOMOLOGY 1) C.G. S.X.
0.13 2e-19 99 Populus trichocarpa PtpAffx.213760.1.S1_s_at pmrna26870 hypothetical protein - 5e-20 At2g43800 formin homology 2 domain-containing protein / FH2 domain-containing protein C.G. S.X.
0.02 6e-3 44 Triticum aestivum Ta.4352.2.S1_a_at BJ261195 CRC-related protein - 9e-3 At1g69180 CRC (CRABS CLAW) C.G. S.X.
0.06 3e-8 59 Vitis vinifera 1609174_at CF403273 hypothetical protein LOC100252716 - 5e-48 At3g25500 AFH1 (FORMIN HOMOLOGY 1) C.G. S.X.
0.01 2e-3 44 Zea mays Zm.8477.1.S1_at CD991129 VAMP protein SEC22 - 3e+0 At3g12090 TET6 (TETRASPANIN6) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016043 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
L GO:0030036 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage