Gene omics information

Query gene ID At2g43790
Gene name ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5673.0At2g43790818982ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.S.X.H.G.
0.8994.6At4g00720828023ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAS.X.H.G.
0.8491.9At1g33250840219fringe-related proteinF:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFOS.X.H.G.
0.8290.9At5g06560830544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.7687.4At1g71410843482protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVAS.X.H.G.
0.7284.8At5g23670832432LCB2Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.S.X.H.G.
0.6478.9At5g32440833203-F:unknown;P:unknown;C:chloroplast;OPMFBS.X.H.G.
0.6378.1At5g64920836616CIP8 (COP1-INTERACTING PROTEIN 8)Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.S.X.H.G.
0.6176.7At5g22000832260RHF2A (RING-H2 GROUP F2A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.S.X.H.G.
0.5773.8At1g06890837199transporter-relatedF:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.699.3E-MEXP-1138-raw-cel-1432773354
11.299.2E-MEXP-1138-raw-cel-1432773290
10.699.2GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
10.299.2GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.099.2E-MEXP-1138-raw-cel-1432773258
9.799.1E-MEXP-1138-raw-cel-1432773226
9.799.1GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
9.799.1E-MEXP-1138-raw-cel-1432772682
9.599.1E-MEXP-1138-raw-cel-1432772554
9.299.1E-MEXP-1138-raw-cel-1432772522
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.492e-74280At3g59790825148ATMPK10member of MAP KinaseC.G.S.X.
0.232e-1997At3g45640823706ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.C.G.S.X.
0.094e-1169At1g59580842248ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2)encodes a mitogen-activated kinase involved in innate immunityC.G.S.X.
0.174e-859At1g07880837303ATMPK13member of MAP KinaseC.G.S.X.
0.122e-654At4g01370828151ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Its substrates include MKS1.C.G.S.X.
0.112e-654At1g10210837559ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)Encodes ATMPK1.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.425e-70266Glycine maxGma.4214.1.S1_atCD418435mitogen-activated protein kinase 2-5e-70At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.359e-54210Hordeum vulgareContig7661_atContig7661--2e-53At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.367e-36153Oryza sativaOs06g0154500AK111691.1-Mitogen-activated protein kinase (MAP kinase 6)5e-36At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.414e-86319Populus trichocarpaPtpAffx.10664.1.S1_s_atCV244216hypothetical protein-3e-86At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.297e-53208Triticum aestivumTa.23916.1.S2_s_atAY173962.1Mitogen-activated protein kinase-1e-52At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.248e-50196Vitis vinifera1610061_atCB982096--5e-49At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
0.357e-51200Zea maysZm.218.1.A1_atAB016802.1MAP kinase 5-2e-50At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0080136The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
XGO:0010120The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin.
XGO:0042542A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.
XGO:0009864The series of molecular signals mediated by jasmonic acid involved in induced systemic resistance.
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0000302A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009723A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
SGO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
SGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
04650Link to KEGG PATHWAYNatural killer cell mediated cytotoxicity
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage