CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g43620

Gene name chitinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.95 97.0 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.91 95.6 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. S.X. H.G.
0.86 93.1 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.75 86.9 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.74 86.1 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA S.X. H.G.
0.71 84.2 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO S.X. H.G.
0.71 84.2 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.67 81.6 At1g49000 841322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.48 62.5 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
96.4 99.9 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
81.7 99.9 GSM142836 MG001_ATH1_A15-Torres-4N6 GSE6176 Impact of Type III effectors on plant defense responses
78.5 99.9 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
77.6 99.9 E-NASC-76-raw-cel-1359878900
76.9 99.9 GSM128663 Underwood_1-16_Cor-hrpS-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
74.8 99.9 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
73.1 99.9 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
67.2 99.8 GSM128685 Underwood_1-38_E.coli-TUV86-2-fliC-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
66.3 99.8 GSM142834 MG001_ATH1_A12-Torres-5N6 GSE6176 Impact of Type III effectors on plant defense responses
65.4 99.8 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 4e-115 414 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM C.G. S.X.
0.17 5e-10 65 At1g56680 842124 glycoside hydrolase family 19 protein F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV C.G. S.X.
0.10 2e-6 54 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV C.G. S.X.
0.12 4e-4 46 At2g43600 818962 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV C.G. S.X.
0.02 4e-1 36 At5g65940 836724 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) hydrolyzes beta-hydroxyisobutyryl-CoA C.G. S.X.
0.02 4e-1 36 At4g18170 827542 WRKY28 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.03 4e-1 36 At3g54420 824608 ATEP3 encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.80698.1.S1_at BE057605 - - 3e-1 At2g43620 chitinase, putative C.G. S.X.
0.04 5e-5 48 Hordeum vulgare Contig14498_at Contig14498 - - 9e-3 At2g43590 chitinase, putative C.G. S.X.
0.03 3e+0 34 Oryza sativa Os12g0516500 NM_194205.1 - - 8e-1 At2g27720 60S acidic ribosomal protein P2 (RPP2A) C.G. S.X.
0.05 6e-4 46 Populus trichocarpa PtpAffx.224417.1.S1_at pmrna42923 - - 3e-4 At2g43620 chitinase, putative C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.1929.1.S1_at CK212185 - - 4e-5 At2g43610 glycoside hydrolase family 19 protein C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1621319_s_at CB981122 - - 3e-1 At2g43620 chitinase, putative C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.1143.1.A1_at AW399931 - - 8e+0 At5g01340 mitochondrial substrate carrier family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage