CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g43590

Gene name chitinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV S.X. H.G.
0.75 86.9 At4g19810 827725 glycosyl hydrolase family 18 protein F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA S.X. H.G.
0.67 81.6 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. S.X. H.G.
0.33 38.1 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO S.X. H.G.
0.21 15.8 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
97.2 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
93.2 99.9 GSM39192 RRE1_C2 GSE2169 rre1 and rre2 mutants
91.7 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
91.4 99.9 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
89.1 99.9 GSM39208 RRE2_C2 GSE2169 rre1 and rre2 mutants
85.0 99.9 GSM39201 Col_C3 GSE2169 rre1 and rre2 mutants
82.8 99.9 GSM39199 Col_C1 GSE2169 rre1 and rre2 mutants
75.3 99.9 E-MEXP-1784-raw-cel-1661572992
72.2 99.9 GSM39209 RRE2_C3 GSE2169 rre1 and rre2 mutants
70.5 99.9 E-MEXP-1784-raw-cel-1661573018
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 2e-92 339 At3g47540 823908 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOF C.G. S.X.
0.71 3e-63 242 At2g43580 818960 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV C.G. S.X.
0.12 7e-9 61 At3g54420 824608 ATEP3 encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. C.G. S.X.
0.10 2e-6 54 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM C.G. S.X.
0.07 3e-5 50 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV C.G. S.X.
0.04 1e-4 48 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. C.G. S.X.
0.07 2e-3 44 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM C.G. S.X.
0.04 3e-2 40 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV C.G. S.X.
0.01 4e-1 36 At3g45650 823707 NAXT1 (NITRATE EXCRETION TRANSPORTER1) Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-4 48 Glycine max GmaAffx.89972.1.S1_s_at CF805697 - - 6e-5 At2g43590 chitinase, putative C.G. S.X.
0.07 3e-3 42 Hordeum vulgare Contig14498_at Contig14498 - - 9e-3 At2g43590 chitinase, putative C.G. S.X.
0.05 2e-1 38 Oryza sativa Os04g0494100 AB096140.1 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 1e-1 At2g43590 chitinase, putative C.G. S.X.
0.05 5e-1 36 Populus trichocarpa PtpAffx.225260.1.S1_at pmrna44483 hypothetical protein - 4e-13 At3g54420 ATEP3 C.G. S.X.
0.05 2e+0 34 Triticum aestivum Ta.2278.2.S1_at CK196331 - - 5e-2 At3g47540 chitinase, putative C.G. S.X.
0.07 5e-4 44 Vitis vinifera 1613871_at CF207387 hypothetical protein LOC100256098 - 8e-6 At3g54420 ATEP3 C.G. S.X.
0.05 7e-7 54 Zea mays Zm.1595.1.S1_at CD967190 endochitinase A - 6e-1 At3g54420 ATEP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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