Gene omics information

Query gene ID At2g43580
Gene name chitinase, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3235.7At2g43580818960chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMVS.X.H.G.
0.4050.8At2g20880816622AP2 domain-containing transcription factor, putativeF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFVS.X.H.G.
0.4050.8At4g28140828929AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.S.X.H.G.
0.2522.6At5g44420834469PDF1.2Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.S.X.H.G.
0.2217.5At5g61160836237AACT1 (anthocyanin 5-aromatic acyltransferase 1)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
384.6100.0GSM39200Col_C2GSE2169rre1 and rre2 mutants
365.8100.0GSM152145siz1-3 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
340.9100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
327.5100.0GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
315.3100.0GSM176878AWP_AL_Txed_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
254.9100.0GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutants
232.9100.0GSM152141siz1-3 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
165.3100.0E-MEXP-711-raw-cel-1563002768
163.299.9GSM39208RRE2_C2GSE2169rre1 and rre2 mutants
153.999.9E-MEXP-711-raw-cel-1563002803
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.713e-63242At2g43590818961chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMVC.G.S.X.
0.524e-47188At3g47540823908chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOFC.G.S.X.
0.064e-756At3g54420824608ATEP3encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.C.G.S.X.
0.031e-138At4g01700828131chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVFC.G.S.X.
0.022e+034At4g31770829305calcineurin-like phosphoesterase family proteinF:hydrolase activity, hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity;P:mRNA processing;C:cellular_component unknown;MFOPBC.G.S.X.
0.012e+034At4g15070827170DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOC.G.S.X.
0.012e+034At2g43900818994inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphataseF:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;OMBFPVAC.G.S.X.
0.022e+034At1g05850837095POM1 (POM-POM1)Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.C.G.S.X.
0.016e+032At5g55840835678pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.079e-652Glycine maxGmaAffx.89972.1.S1_s_atCF805697--6e-5At2g43590chitinase, putativeC.G.S.X.
0.031e+130Hordeum vulgareHY02N18u_s_atHY02N18u--8e+0Atmg01050-C.G.S.X.
0.022e-138Oryza sativaOsAffx.7273.1.S1_at---0C.G.S.X.
0.141e-448Populus trichocarpaPtpAffx.225260.1.S1_atpmrna44483hypothetical protein-4e-13At3g54420ATEP3C.G.S.X.
0.032e+034Triticum aestivumTaAffx.28535.1.S1_atCA658959--9e-1At2g37920emb1513 (embryo defective 1513)C.G.S.X.
0.041e-136Vitis vinifera1606625_atCF603972hypothetical protein LOC100257850-1e-1At2g43590chitinase, putativeC.G.S.X.
0.027e-134Zea maysZm.1595.1.S1_atCD967190endochitinase A-6e-1At3g54420ATEP3C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0016998The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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