CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g43500

Gene name RWP-RK domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At2g43500 818951 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMF S.X. H.G.
0.25 22.6 At5g49990 835063 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV S.X. H.G.
0.17 10.2 At1g27300 839619 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.11 4.1 At5g22290 832289 anac089 (Arabidopsis NAC domain containing protein 89) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.07 1.9 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.2 99.9 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
93.1 99.9 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
86.3 99.9 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
77.6 99.9 GSM133318 RIKEN-LI4B GSE5701 AtGenExpress: Basic hormone treatment of seeds
60.1 99.8 E-MEXP-849-raw-cel-1181980982
55.6 99.8 GSM133311 RIKEN-LI1A GSE5701 AtGenExpress: Basic hormone treatment of seeds
54.8 99.8 GSM133313 RIKEN-LI2A GSE5701 AtGenExpress: Basic hormone treatment of seeds
54.5 99.8 GSM133317 RIKEN-LI4A GSE5701 AtGenExpress: Basic hormone treatment of seeds
53.8 99.8 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.6 99.8 E-MEXP-849-raw-cel-1181980990
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 8e-98 359 At3g59580 825127 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:unknown;PBOM C.G. S.X.
0.01 4e-7 57 At2g17150 816220 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:unknown;POFM C.G. S.X.
0.01 1e+0 36 At5g42700 834279 transcriptional factor B3 family protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PF C.G. S.X.
0.01 1e+0 36 At5g47580 834808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.00 1e+0 36 At5g40450 834043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV C.G. S.X.
0.01 1e+0 36 At1g03350 838679 BSD domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
0.01 6e+0 34 At5g40000 833997 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Glycine max Gma.3299.1.S1_at AW705982 - - 8e-1 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
0.02 1e-2 42 Hordeum vulgare HZ01B01u_at HZ01B01u - - 3e-1 At3g12170 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.04 7e-4 48 Oryza sativa Os11g0264300 AK064859.1 - Plant regulator RWP-RK domain containing protein 1e-19 At3g59580 RWP-RK domain-containing protein C.G. S.X.
0.12 2e-9 65 Populus trichocarpa PtpAffx.222869.1.S1_s_at pmrna40568 hypothetical protein - 3e-13 At3g59580 RWP-RK domain-containing protein C.G. S.X.
0.04 4e-4 48 Triticum aestivum TaAffx.71622.1.S1_at CA694216 - - 2e-2 At3g59580 RWP-RK domain-containing protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1612651_at CB347748 hypothetical protein LOC100254350 - 1e-28 At1g79940 ATERDJ2A C.G. S.X.
0.03 4e-5 50 Zea mays Zm.3900.2.A1_at BM267197 hypothetical protein LOC100191188 - 1e-17 At3g59580 RWP-RK domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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