CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g43200

Gene name dehydration-responsive family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g43200 818921 dehydration-responsive family protein F:unknown;P:unknown;C:unknown;PBOAMF S.X. H.G.
0.38 46.7 At5g54520 835540 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPA S.X. H.G.
0.32 35.7 At1g55630 842012 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA S.X. H.G.
0.29 30.3 At5g06180 830505 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP S.X. H.G.
0.20 14.4 At4g35140 829666 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:unknown;MBFOPA S.X. H.G.
0.18 11.4 At4g12640 826877 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBA S.X. H.G.
0.17 10.2 At3g07930 819984 HhH-GPD base excision DNA repair family protein F:unknown;P:base-excision repair;C:unknown;MPO S.X. H.G.
0.17 10.2 At4g26980 828806 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.14 6.8 At4g23330 828432 eukaryotic translation initiation factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.07 1.9 At5g43920 834414 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:cellular_component unknown;MFOBPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
384.1 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
252.4 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
81.8 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.5 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
71.0 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.8 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.2 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-3 46 At3g27290 822348 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.03 1e-3 46 At1g04430 839522 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBO C.G. S.X.
0.02 4e-3 44 At2g33250 817887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.04 4e-3 44 At1g33170 840213 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:unknown;PBOAM C.G. S.X.
0.06 4e-3 44 At1g26850 839229 dehydration-responsive family protein F:unknown;P:unknown;C:Golgi apparatus, membrane;PBO C.G. S.X.
0.04 1e-2 42 At2g03480 814877 dehydration-responsive protein-related F:unknown;P:unknown;C:mitochondrion;PBOAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-8 59 Glycine max Gma.1479.2.S1_at AW279120 - - 6e-21 At4g19120 ERD3 (early-responsive to dehydration 3) C.G. S.X.
0.04 2e-3 44 Hordeum vulgare Contig21277_at Contig21277 - - 8e-12 At1g26850 dehydration-responsive family protein C.G. S.X.
0.03 3e-2 42 Oryza sativa Os10g0569300 AK072459.1 - Putative methyltransferase DUF248 family protein 3e-10 At1g26850 dehydration-responsive family protein C.G. S.X.
0.12 2e-21 105 Populus trichocarpa PtpAffx.74542.1.S1_s_at CX658440 hypothetical protein - 5e-22 At2g43200 dehydration-responsive family protein C.G. S.X.
0.05 1e-6 56 Triticum aestivum Ta.30375.1.A1_at CK199586 - - 4e-7 At2g43200 dehydration-responsive family protein C.G. S.X.
0.11 1e-9 63 Vitis vinifera 1612756_at CF207475 hypothetical protein LOC100258541 - 1e-45 At1g26850 dehydration-responsive family protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.2713.2.S1_a_at AI881541 - - 1e-30 At5g60790 ATGCN1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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