CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g43000

Gene name anac042 (Arabidopsis NAC domain containing protein 42)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At2g43000 818902 anac042 (Arabidopsis NAC domain containing protein 42) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At5g11210 830991 ATGLR2.5 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.40 50.8 At5g40990 834101 GLIP1 (GDSL LIPASE1) Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway. S.X. H.G.
0.21 15.8 At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA S.X. H.G.
0.07 1.9 At5g13080 831147 WRKY75 WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
474.1 100.0 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
324.5 100.0 GSM133811 Diamond_A-4-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
223.6 100.0 GSM133808 Diamond_A-1-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
206.3 100.0 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
113.8 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
98.6 99.9 GSM133813 Diamond_A-2-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
77.1 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.0 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.2 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.7 99.8 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 7e-12 71 At3g12910 820475 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.04 4e-7 56 At5g39820 833978 anac094 (Arabidopsis NAC domain containing protein 94) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM C.G. S.X.
0.03 3e-5 50 At5g61430 836264 ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.04 1e-4 48 At4g10350 826627 ANAC070 (Arabidopsis NAC domain containing protein 70) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.03 1e-4 48 At2g46770 819290 EMB2301 (EMBRYO DEFECTIVE 2301) NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop. C.G. S.X.
0.08 4e-4 46 At3g15170 820748 CUC1 (CUP-SHAPED COTYLEDON1) Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. C.G. S.X.
0.05 2e-3 44 At5g66300 836762 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. C.G. S.X.
0.09 2e-3 44 At1g26870 837796 FEZ (FEZ) F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;P C.G. S.X.
0.05 7e-3 42 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 4e-5 50 Glycine max GmaAffx.30791.1.S1_at BE330831 - - 8e-5 At3g12910 transcription factor C.G. S.X.
0.02 3e+0 32 Hordeum vulgare HVSMEg0005B12r2_at HVSMEg0005B12r2 - - 1e+0 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) C.G. S.X.
0.13 9e-7 56 Oryza sativa Os07g0138200 9635.m00387 - - 6e-7 At2g43000 anac042 (Arabidopsis NAC domain containing protein 42) C.G. S.X.
0.23 6e-10 65 Populus trichocarpa PtpAffx.205672.1.S1_at pmrna11198 NAC domain protein, IPR003441 - 3e-10 At2g43000 anac042 (Arabidopsis NAC domain containing protein 42) C.G. S.X.
0.06 7e-3 42 Triticum aestivum TaAffx.52152.1.S1_at CA712210 - - 4e-3 At2g43000 anac042 (Arabidopsis NAC domain containing protein 42) C.G. S.X.
0.18 9e-15 79 Vitis vinifera 1613141_at CF518362 hypothetical protein LOC100259242 - 2e-14 At2g43000 anac042 (Arabidopsis NAC domain containing protein 42) C.G. S.X.
0.02 7e-1 34 Zea mays Zm.14456.2.S1_a_at CA399302 allyl alcohol dehydrogenase-like protein - 2e-5 At2g36620 RPL24A (ribosomal protein L24) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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