CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42900

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At2g42900 818891 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.50 65.3 At5g20270 832149 HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors S.X. H.G.
0.47 61.2 At1g35170 840404 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOF S.X. H.G.
0.36 43.6 At1g25230 839105 purple acid phosphatase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPF S.X. H.G.
0.36 43.6 At3g12710 820453 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAM S.X. H.G.
0.33 38.1 At5g48900 834948 pectate lyase family protein F:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFO S.X. H.G.
0.29 30.3 At2g41540 818752 GPDHC1 Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene. S.X. H.G.
0.29 30.3 At3g12610 820441 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. S.X. H.G.
0.22 17.5 At1g55260 841970 lipid binding F:lipid binding;P:lipid transport;C:nucleus, anchored to membrane;PO S.X. H.G.
0.22 17.5 At4g24510 828553 CER2 (ECERIFERUM 2) Involved in C28 to C30 fatty acid elongation. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.7 99.9 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
82.1 99.9 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
81.1 99.9 GSM131610 ATGE_43_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
77.2 99.9 GSM131609 ATGE_43_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
69.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
51.1 99.8 GSM131611 ATGE_43_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
50.8 99.8 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
42.0 99.8 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
39.1 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
38.1 99.8 GSM131597 ATGE_39_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-2 40 At4g31210 829248 DNA topoisomerase family protein F:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;OBMFAPV C.G. S.X.
0.03 3e-2 40 At1g27420 839632 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBVOAF C.G. S.X.
0.01 4e-1 36 At5g21482 832248 CKX7 (CYTOKININ OXIDASE 7) This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. C.G. S.X.
0.01 4e-1 36 At3g53950 824562 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOM C.G. S.X.
0.02 4e-1 36 At2g22340 816766 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e+0 34 At5g39480 833944 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e+0 34 At5g39490 833945 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e+0 34 At5g30510 833138 RPS1 (RIBOSOMAL PROTEIN S1) F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA C.G. S.X.
0.02 2e+0 34 At1g43260 840927 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 44 Glycine max Gma.12657.1.S1_at CD487471 - - 9e-11 At3g26710 CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) C.G. S.X.
0.03 2e-1 36 Hordeum vulgare HK04M02r_at HK04M02r - - 2e-1 At2g42900 - C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.26418.1.S1_at - - - 0 C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.110830.1.S1_at DN492971 hypothetical protein - 4e-2 At5g56140 KH domain-containing protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.32117.1.S1_at CA600589 - - 1e+0 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) C.G. S.X.
0.03 8e+0 30 Vitis vinifera 1620970_at CF404321 - - 4e+0 At2g13150 transcription factor C.G. S.X.
0.03 3e+0 32 Zea mays Zm.12207.1.S1_at BM379642 - - 5e+0 At5g14690 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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