Gene omics information

Query gene ID At2g42900
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At2g42900818891-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.5065.3At5g20270832149HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1)heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptorsS.X.H.G.
0.4761.2At1g35170840404-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOFS.X.H.G.
0.3643.6At1g25230839105purple acid phosphatase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPFS.X.H.G.
0.3643.6At3g12710820453methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMS.X.H.G.
0.3338.1At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOS.X.H.G.
0.2930.3At2g41540818752GPDHC1Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.S.X.H.G.
0.2930.3At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.S.X.H.G.
0.2217.5At1g55260841970lipid bindingF:lipid binding;P:lipid transport;C:nucleus, anchored to membrane;POS.X.H.G.
0.2217.5At4g24510828553CER2 (ECERIFERUM 2)Involved in C28 to C30 fatty acid elongation.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
90.799.9GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
82.199.9GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
81.199.9GSM131610ATGE_43_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
77.299.9GSM131609ATGE_43_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
69.299.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
51.199.8GSM131611ATGE_43_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
50.899.8GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
42.099.8GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
39.199.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
38.199.8GSM131597ATGE_39_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-240At4g31210829248DNA topoisomerase family proteinF:DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding;P:DNA topological change, DNA unwinding during replication, DNA metabolic process;C:chromosome;OBMFAPVC.G.S.X.
0.033e-240At1g27420839632kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBVOAFC.G.S.X.
0.014e-136At5g21482832248CKX7 (CYTOKININ OXIDASE 7)This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.C.G.S.X.
0.014e-136At3g53950824562glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOMC.G.S.X.
0.024e-136At2g22340816766unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.022e+034At5g39480833944F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.022e+034At5g39490833945F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.022e+034At5g30510833138RPS1 (RIBOSOMAL PROTEIN S1)F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFAC.G.S.X.
0.022e+034At1g43260840927-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-344Glycine maxGma.12657.1.S1_atCD487471--9e-11At3g26710CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)C.G.S.X.
0.032e-136Hordeum vulgareHK04M02r_atHK04M02r--2e-1At2g42900-C.G.S.X.
0.023e+034Oryza sativaOsAffx.26418.1.S1_at---0C.G.S.X.
0.036e-136Populus trichocarpaPtpAffx.110830.1.S1_atDN492971hypothetical protein-4e-2At5g56140KH domain-containing proteinC.G.S.X.
0.031e-138Triticum aestivumTaAffx.32117.1.S1_atCA600589--1e+0At3g21840ASK7 (ARABIDOPSIS SKP1-LIKE 7)C.G.S.X.
0.038e+030Vitis vinifera1620970_atCF404321--4e+0At2g13150transcription factorC.G.S.X.
0.033e+032Zea maysZm.12207.1.S1_atBM379642--5e+0At5g14690unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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