CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42800

Gene name AtRLP29 (Receptor Like Protein 29)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA S.X. H.G.
0.80 89.8 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. S.X. H.G.
0.73 85.5 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF S.X. H.G.
0.67 81.6 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.8 99.9 E-MEXP-682-raw-cel-922397594
66.9 99.8 E-MEXP-682-raw-cel-922397713
63.7 99.8 E-MEXP-682-raw-cel-922397679
58.6 99.8 E-MEXP-682-raw-cel-922397645
56.9 99.8 E-MEXP-682-raw-cel-922397696
53.5 99.8 GSM131665 ATGE_46_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
52.8 99.8 E-MEXP-682-raw-cel-922397611
52.6 99.8 GSM62705 arf6 arf8_stem GSE2848 Auxin Response Factor mediated flower gene expression
49.6 99.8 GSM131676 ATGE_50_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
48.8 99.8 GSM131666 ATGE_46_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-3 44 At2g15320 816021 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA C.G. S.X.
0.04 1e-2 42 At2g19780 816497 leucine-rich repeat family protein / extensin family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA C.G. S.X.
0.01 4e-2 40 At5g40340 834032 PWWP domain-containing protein F:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVA C.G. S.X.
0.01 2e-1 38 At4g26540 828760 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 2e-1 38 At3g03370 821271 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 38 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV C.G. S.X.
0.01 7e-1 36 At5g38990 833891 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 7e-1 36 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Glycine max GmaAffx.86775.1.S1_at BI498707 - - 5e-3 At5g64380 fructose-1,6-bisphosphatase family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEg0013J23r2_s_at HVSMEg0013J23r2 - - 4e+0 At2g27930 binding C.G. S.X.
0.02 5e+0 34 Oryza sativa Os12g0266500 9640.m01621 - - 4e-2 At3g14670 unknown protein C.G. S.X.
0.13 3e-10 67 Populus trichocarpa PtpAffx.222983.1.S1_at pmrna40737 hypothetical protein - 2e-10 At2g42800 AtRLP29 (Receptor Like Protein 29) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.26388.1.S1_at CA689349 - - 2e-1 At3g21670 nitrate transporter (NTP3) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1622102_at CD010899 - - 1e+0 At5g04047 - C.G. S.X.
0.02 5e+0 32 Zea mays Zm.5479.1.A1_at AY109635.1 - - 3e-1 At1g71230 CSN5B (COP9-SIGNALOSOME 5B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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