CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42710

Gene name ribosomal protein L1 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.97 97.6 At2g42710 818871 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV S.X. H.G.
0.59 74.7 At1g15420 838113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.54 69.5 At1g63780 842682 IMP4 Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies. S.X. H.G.
0.50 65.3 At5g38890 833880 exoribonuclease-related F:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOP S.X. H.G.
0.47 61.2 At1g51510 841576 Y14 This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm. S.X. H.G.
0.42 53.9 At5g12220 831096 las1-like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.40 50.8 At2g39795 818565 mitochondrial glycoprotein family protein / MAM33 family protein F:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMB S.X. H.G.
0.40 50.8 At2g45240 819132 MAP1A (METHIONINE AMINOPEPTIDASE 1A) Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development. S.X. H.G.
0.39 48.4 At1g51730 841598 RWD domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.34 39.8 At1g20370 838625 tRNA pseudouridine synthase family protein F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
84.2 99.9 E-ATMX-13-raw-cel-1556149775
69.9 99.9 E-ATMX-13-raw-cel-1556149935
67.2 99.8 E-ATMX-13-raw-cel-1556149839
63.8 99.8 E-ATMX-13-raw-cel-1556149743
63.2 99.8 E-ATMX-13-raw-cel-1556149727
63.1 99.8 GSM134204 Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
62.0 99.8 E-ATMX-13-raw-cel-1556149903
61.4 99.8 E-ATMX-13-raw-cel-1556149823
58.6 99.8 E-ATMX-13-raw-cel-1556149855
56.8 99.8 E-ATMX-13-raw-cel-1556149807
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-3 44 At1g53645 841801 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MOFPBVA C.G. S.X.
0.03 4e-2 40 At3g06545 819833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 2e-1 38 At4g33400 829477 dem protein-related / defective embryo and meristems protein-related F:molecular_function unknown;P:N-terminal protein myristoylation;C:cytosol, nucleus, plasma membrane;FOPM C.G. S.X.
0.01 2e-1 38 At4g17620 827482 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPVA C.G. S.X.
0.01 2e-1 38 At1g24706 839081 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 6e-1 36 At5g58530 835966 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBF C.G. S.X.
0.02 6e-1 36 At5g58590 835973 RANBP1 (RAN BINDING PROTEIN 1) Encodes a Ran-binding protein 1 homolog (RanBP1). C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-14 79 Glycine max GmaAffx.15132.1.A1_at BU545380 - - 2e-14 At2g42710 ribosomal protein L1 family protein C.G. S.X.
0.03 5e+0 32 Hordeum vulgare HA10O11u_x_at HA10O11u - - 2e+0 At3g51171 - C.G. S.X.
0.03 2e-2 42 Oryza sativa Os08g0151500 9636.m00483 - Conserved hypothetical protein 3e-1 At5g19875 unknown protein C.G. S.X.
0.14 2e-10 67 Populus trichocarpa PtpAffx.7321.1.S1_at CV275702 hypothetical protein - 2e-10 At2g42710 ribosomal protein L1 family protein C.G. S.X.
0.03 1e-2 42 Triticum aestivum TaAffx.83851.1.S1_at CA649572 - - 5e-1 At3g13227 serine-rich protein-related C.G. S.X.
0.12 8e-13 73 Vitis vinifera 1613052_at CK138117.1 hypothetical protein LOC100257519 - 2e-12 At2g42710 ribosomal protein L1 family protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.8840.1.A1_at BM075848 - - 2e-1 At1g43610 NLI interacting factor (NIF) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
L GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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