Gene omics information

Query gene ID At2g42710
Gene name ribosomal protein L1 family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9797.6At2g42710818871ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAVS.X.H.G.
0.5974.7At1g15420838113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.5469.5At1g63780842682IMP4Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies.S.X.H.G.
0.5065.3At5g38890833880exoribonuclease-relatedF:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOPS.X.H.G.
0.4761.2At1g51510841576Y14This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.S.X.H.G.
0.4253.9At5g12220831096las1-like family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.4050.8At2g39795818565mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMBS.X.H.G.
0.4050.8At2g45240819132MAP1A (METHIONINE AMINOPEPTIDASE 1A)Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.S.X.H.G.
0.3948.4At1g51730841598RWD domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.3439.8At1g20370838625tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
63.199.8GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-344At1g53645841801hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:unknown;MOFPBVAC.G.S.X.
0.034e-240At3g06545819833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.012e-138At4g33400829477dem protein-related / defective embryo and meristems protein-relatedF:molecular_function unknown;P:N-terminal protein myristoylation;C:cytosol, nucleus, plasma membrane;FOPMC.G.S.X.
0.012e-138At4g17620827482glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPVAC.G.S.X.
0.012e-138At1g24706839081unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.026e-136At5g58530835966glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBFC.G.S.X.
0.026e-136At5g58590835973RANBP1 (RAN BINDING PROTEIN 1)Encodes a Ran-binding protein 1 homolog (RanBP1).C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.147e-1479Glycine maxGmaAffx.15132.1.A1_atBU545380--2e-14At2g42710ribosomal protein L1 family proteinC.G.S.X.
0.035e+032Hordeum vulgareHA10O11u_x_atHA10O11u--2e+0At3g51171-C.G.S.X.
0.032e-242Oryza sativaOs08g01515009636.m00483-Conserved hypothetical protein3e-1At5g19875unknown proteinC.G.S.X.
0.142e-1067Populus trichocarpaPtpAffx.7321.1.S1_atCV275702hypothetical protein-2e-10At2g42710ribosomal protein L1 family proteinC.G.S.X.
0.031e-242Triticum aestivumTaAffx.83851.1.S1_atCA649572--5e-1At3g13227serine-rich protein-relatedC.G.S.X.
0.128e-1373Vitis vinifera1613052_atCK138117.1hypothetical protein LOC100257519-2e-12At2g42710ribosomal protein L1 family proteinC.G.S.X.
0.024e+032Zea maysZm.8840.1.A1_atBM075848--2e-1At1g43610NLI interacting factor (NIF) family proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
CGO:0006412The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
LGO:0006396Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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