CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42660

Gene name myb family transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At2g42660 818866 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO S.X. H.G.
0.67 81.6 At4g19980 827742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.55 70.6 At1g48510 841272 cytochrome c oxidase assembly protein surfeit-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB S.X. H.G.
0.50 65.3 At5g42630 834270 ATS (ABERRANT TESTA SHAPE) Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis. S.X. H.G.
0.17 10.2 At3g46500 823803 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
168.4 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
161.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
133.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
114.9 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.2 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.6 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
84.7 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.2 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.7 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
77.7 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 3e-5 50 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF C.G. S.X.
0.03 2e-3 44 At5g16560 831518 KAN (KANADI) Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis. C.G. S.X.
0.03 1e-1 38 At5g42630 834270 ATS (ABERRANT TESTA SHAPE) Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis. C.G. S.X.
0.02 1e-1 38 At5g62560 836376 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMFOB C.G. S.X.
0.02 1e-1 38 At3g14680 820696 CYP72A14 putative cytochrome P450 C.G. S.X.
0.02 1e-1 38 At1g49560 841380 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO C.G. S.X.
0.02 4e-1 36 At5g40680 834068 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPOBFA C.G. S.X.
0.03 4e-1 36 At2g01060 814630 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 38 Glycine max GmaAffx.13464.1.S1_at BG507623 - - 9e-44 At5g16560 KAN (KANADI) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEb0010B05r2_x_at HVSMEb0010B05r2 - - 3e+0 At2g42660 myb family transcription factor C.G. S.X.
0.06 3e+0 34 Oryza sativa OsAffx.30765.1.S1_at - - - 0 C.G. S.X.
0.15 3e-2 40 Populus trichocarpa PtpAffx.213649.1.S1_at pmrna26658 hypothetical protein - 1e-2 At2g42660 myb family transcription factor C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.16118.1.S1_at CA599902 - - 2e-1 At4g30050 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612570_at CB981338 hypothetical protein LOC100249381 - 2e-24 At1g32130 - C.G. S.X.
0.02 6e-1 34 Zea mays Zm.9762.1.A1_at CF629937 hypothetical protein LOC100277958 - 3e-11 At3g45610 Dof-type zinc finger domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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