Gene omics information

Query gene ID At2g42560
Gene name late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g42560818856late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVAS.X.H.G.
0.9697.3At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.9195.6At1g75490843885DNA binding / transcription factorencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.S.X.H.G.
0.8994.6At1g26400839182FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMS.X.H.G.
0.8994.6At5g607608361972-phosphoglycerate kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFVS.X.H.G.
0.8994.6At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8994.6At2g19320816449unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8994.6At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8894.0At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.8894.0At4g27530828862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
605.4100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
598.6100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
529.6100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
519.3100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
472.1100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
455.8100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
451.4100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
447.2100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
374.0100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
97.599.9GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-240At3g22800821851leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAC.G.S.X.
0.012e-138At2g31650817721ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX)Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.C.G.S.X.
0.022e-138At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFC.G.S.X.
0.002e-138At1g48090841226phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:chloroplast;MOFPBAC.G.S.X.
0.019e-136At5g28180832894kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMBOAC.G.S.X.
0.019e-136At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAC.G.S.X.
0.019e-136At4g27460828855CBS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.019e-136At4g34100829556protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGma.11528.2.S1_a_atBG316001--3e-1Atmg00750-C.G.S.X.
0.017e-342Hordeum vulgareContig4477_atContig4477--4e-2At4g10610CID12C.G.S.X.
0.021e-140Oryza sativaOs06g01481009634.m00477--1e+0At4g33660unknown proteinC.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.7708.1.A1_atCV272946--2e+0At1g63855unknown proteinC.G.S.X.
0.026e-240Triticum aestivumTaAffx.83588.2.S1_x_atCA678400--7e-1At5g11190SHN3 (shine3)C.G.S.X.
0.017e-238Vitis vinifera1618684_atCF202362.1--3e-4At3g08610unknown proteinC.G.S.X.
0.012e+034Zea maysZm.9915.1.A1_x_atBM269526--3e-1At4g33660unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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