CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42530

Gene name COR15B (COLD REGULATED 15B)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF S.X. H.G.
0.89 94.6 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. S.X. H.G.
0.60 75.7 At5g52310 835307 LTI78 (LOW-TEMPERATURE-INDUCED 78) cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression S.X. H.G.
0.44 57.2 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. S.X. H.G.
0.44 57.2 At5g15960 831453 KIN1 cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.3 99.7 GSM128801 Zarka_2-5_MT-24HCA(SOIL)_Rep1_ATH1 GSE5535 Response to cold, soil grown plants
30.6 99.7 GSM128808 Zarka_3-4_MT-E2A_Rep1_ATH1 GSE5536 Response to CBF2 expression
30.4 99.7 GSM128802 Zarka_2-6_MT-24HCB(SOIL)_Rep2_ATH1 GSE5535 Response to cold, soil grown plants
30.0 99.7 E-MEXP-1344-raw-cel-1559561713
28.7 99.7 GSM142865 GW001_ATH1_A10-Warre-Wca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
28.6 99.7 GSM128807 Zarka_3-3_MT-E24B_Rep1_ATH1 GSE5536 Response to CBF2 expression
28.0 99.7 GSM265848 short 14A GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
27.9 99.7 GSM265850 short 10A GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
27.5 99.7 E-MEXP-1345-raw-cel-1559561259
26.6 99.7 GSM142866 GW001_ATH1_A11-Warre-6ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 2e-50 198 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. C.G. S.X.
0.02 5e-2 38 At2g42560 818856 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA C.G. S.X.
0.02 2e-1 36 At5g47360 834783 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFBA C.G. S.X.
0.01 8e-1 34 At5g03360 831864 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PBOVMA C.G. S.X.
0.02 8e-1 34 At5g39480 833944 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 8e-1 34 At5g53970 835480 aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment C.G. S.X.
0.02 8e-1 34 At4g01990 828172 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;POFMB C.G. S.X.
0.02 8e-1 34 At3g17470 821012 RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein F:GTP diphosphokinase activity, calcium ion binding;P:guanosine tetraphosphate metabolic process;C:chloroplast;BOMFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.85641.1.S1_at AW164678 - - 8e-1 At2g42530 COR15B (COLD REGULATED 15B) C.G. S.X.
0.05 1e-1 36 Hordeum vulgare S0001000056H02F1_at S0001000056H02F1 - - 2e-1 At2g42530 COR15B (COLD REGULATED 15B) C.G. S.X.
0.03 2e+0 34 Oryza sativa Os06g0683700 AK103599.1 - Hypothetical protein 1e+0 At1g75717 unknown protein C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.216859.1.S1_at pmrna31900 hypothetical protein - 6e-1 At3g61840 unknown protein C.G. S.X.
0.05 3e+0 32 Triticum aestivum TaAffx.52900.1.S1_at CA699227 - - 2e+0 At2g42530 COR15B (COLD REGULATED 15B) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1621914_s_at CF216047 hypothetical protein LOC100249014 - 2e-5 At5g50740 metal ion binding C.G. S.X.
0.03 1e+0 32 Zea mays Zm.3673.1.A1_at AW037200 - - 6e-21 At1g14000 VIK (VH1-INTERACTING KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
C GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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