CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42380

Gene name bZIP transcription factor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g42380 818839 bZIP transcription factor family protein Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. S.X. H.G.
0.68 82.2 At3g12110 820385 ACT11 (actin-11) Encodes an actin that is expressed predominantly during reproductive development. S.X. H.G.
0.63 78.1 At2g43900 818994 inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase F:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;OMBFPVA S.X. H.G.
0.62 77.3 At3g10540 820219 3-phosphoinositide-dependent protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA S.X. H.G.
0.61 76.7 At5g10740 830941 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOBFVA S.X. H.G.
0.58 73.8 At1g24330 839049 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:chloroplast;PMOFBV S.X. H.G.
0.58 73.8 At2g37620 818339 ACT1 (ACTIN 1) Member of the actin gene family. Expressed in mature pollen. S.X. H.G.
0.58 73.8 At1g72460 843578 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.54 69.5 At3g54930 824658 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:chloroplast, protein phosphatase type 2A complex;MPOF S.X. H.G.
0.54 69.5 At3g54690 824634 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein F:isomerase activity, sugar binding;P:carbohydrate metabolic process;C:unknown;BOAFPMV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
189.4 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
106.9 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
106.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
93.4 99.9 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
88.8 99.9 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
73.9 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
61.1 99.8 GSM106917 opr3_JA_22 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
60.6 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
49.0 99.8 GSM106969 opr3_OPDA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
47.2 99.8 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 4e-57 222 At3g58120 824981 BZIP61 Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. C.G. S.X.
0.01 1e-1 38 At4g16970 827405 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.01 5e-1 36 At5g16410 831502 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.02 5e-1 36 At4g12800 826892 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. C.G. S.X.
0.02 5e-1 36 At1g67870 843115 glycine-rich protein F:unknown;P:biological_process unknown;C:unknown;MOBPFAV C.G. S.X.
0.03 5e-1 36 At1g80970 844437 XH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM C.G. S.X.
0.01 5e-1 36 At1g50660 841488 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.02 2e+0 34 At5g64160 836537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 5e-23 109 Glycine max GmaAffx.8854.1.S1_at AI496452 transcription factor bZIP112 - 2e-29 At2g42380 bZIP transcription factor family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig15395_at Contig15395 - - 4e-3 At3g55646 unknown protein C.G. S.X.
0.03 9e-1 36 Oryza sativa Os.57534.1.S1_x_at - - - 0 C.G. S.X.
0.29 3e-21 103 Populus trichocarpa PtpAffx.216399.1.S1_at pmrna31157 hypothetical protein - 2e-40 At2g42380 bZIP transcription factor family protein C.G. S.X.
0.04 5e-4 46 Triticum aestivum Ta.25454.1.S1_at CA638730 - - 6e-4 At3g58120 BZIP61 C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620945_at CF568893 - - 2e-1 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.09 3e-3 42 Zea mays Zm.15154.1.A1_at BM080233 - - 2e-6 At2g42380 bZIP transcription factor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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