Gene omics information

Query gene ID At2g42360
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2217.5At2g42360818837zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.5065.3At3g45060823641ATNRT2.6member of High affinity nitrate transporter familyS.X.H.G.
0.4253.9At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAS.X.H.G.
0.4050.8At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMS.X.H.G.
0.3643.6At4g23210828420protein kinase family proteinEncodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
139.099.9GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responses
138.899.9GSM142852MG001_ATH1_A5-Torres-2N3GSE6176Impact of Type III effectors on plant defense responses
131.399.9GSM142838MG001_ATH1_A17-Torres-6N3GSE6176Impact of Type III effectors on plant defense responses
129.899.9GSM142837MG001_ATH1_A16-Torres-6N1GSE6176Impact of Type III effectors on plant defense responses
117.299.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
88.599.9GSM131139AtGen_B-25_2-4-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
80.499.9GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responses
78.799.9GSM131134AtGen_B-20_2-6-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
75.299.9GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responses
66.699.8GSM142849MG001_ATH1_A2-Torres-1N3GSE6176Impact of Type III effectors on plant defense responses
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.232e-1169At2g42350818836zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.031e-344At5g05810830466ATL43F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.036e-342At2g26110817151unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POMFBC.G.S.X.
0.029e-238At3g51390824302zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFPC.G.S.X.
0.023e-136At5g10010830863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFBPVAC.G.S.X.
0.013e-136At3g58050824974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.013e-136At2g41960818796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.013e-136At1g11130837654SUB (STRUBBELIG)Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3.C.G.S.X.
0.021e+034At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-342Glycine maxGma.12463.1.S1_atBE807144--9e-2At1g55530zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.044e-238Hordeum vulgareContig11316_s_atContig11316--1e-9At2g37860LCD1 (LOWER CELL DENSITY 1)C.G.S.X.
0.043e+034Oryza sativaOs01g0213400AK068075.1-Zn-finger, RING domain containing protein6e-1At4g39260GR-RBP8C.G.S.X.
0.045e-136Populus trichocarpaPtpAffx.212654.1.S1_atpmrna24762hypothetical protein-3e-12At5g60820zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.039e-238Triticum aestivumTaAffx.23786.1.S1_atCA730460--7e-2At2g42360zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.034e-134Vitis vinifera1611792_atCF609858hypothetical protein LOC100262185-2e-2At3g47510unknown proteinC.G.S.X.
0.032e+032Zea maysZm.16056.1.S1_atCD994891hypothetical protein LOC100279380-1e-3At3g1112060S ribosomal protein L41 (RPL41E)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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