CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42200

Gene name SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. S.X. H.G.
0.80 89.8 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 S.X. H.G.
0.75 86.9 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. S.X. H.G.
0.73 85.5 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. S.X. H.G.
0.67 81.6 At4g00870 827990 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO S.X. H.G.
0.50 65.3 At5g44620 834490 CYP706A3 member of CYP706A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
48.8 99.8 E-MEXP-1246-raw-cel-1504120231
41.5 99.8 GSM131681 ATGE_51_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
40.2 99.8 GSM131680 ATGE_51_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
36.6 99.7 E-MEXP-682-raw-cel-922397645
36.3 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.8 99.7 E-MEXP-1246-raw-cel-1504120201
35.1 99.7 GSM131669 ATGE_47_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
35.0 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.0 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.9 99.7 GSM131679 ATGE_51_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 9e-37 155 At3g57920 824961 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. C.G. S.X.
0.05 1e-11 71 At1g69170 843248 squamosa promoter-binding protein-like 6 (SPL6) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM C.G. S.X.
0.05 1e-8 61 At5g50670 835138 squamosa promoter-binding protein, putative F:DNA binding;P:biological_process unknown;C:nucleus;PM C.G. S.X.
0.05 1e-8 61 At5g50570 835126 squamosa promoter-binding protein, putative F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM C.G. S.X.
0.02 2e-6 54 At1g20980 838692 SPL14 (squamosa promoter binding protein-like 14) Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture. C.G. S.X.
0.04 2e-4 48 At3g15270 820758 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. C.G. S.X.
0.02 6e-4 46 At5g43270 834345 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2) member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. The genes are characterized by the presence of the SBP-box, which encodes a protein domain, the C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-3 44 Glycine max Gma.17501.1.S1_at BG650023 - - 8e-4 At3g57920 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig11980_at Contig11980 - - 3e-2 At3g57920 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) C.G. S.X.
0.09 3e-4 48 Oryza sativa Os08g0509600 AK107191.1 - SBP-domain protein 5 (Fragment) 2e-4 At2g42200 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) C.G. S.X.
0.11 6e-11 69 Populus trichocarpa PtpAffx.213302.1.S1_at pmrna26020 hypothetical protein - 4e-11 At2g42200 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) C.G. S.X.
0.03 4e-2 40 Triticum aestivum Ta.3711.1.S1_at BJ308642 - - 5e-2 At1g27360 squamosa promoter-binding protein-like 11 (SPL11) C.G. S.X.
0.04 3e-3 42 Vitis vinifera 1620576_at CD800420 hypothetical protein LOC100246757 - 7e-5 At1g27370 squamosa promoter-binding protein-like 10 (SPL10) C.G. S.X.
0.07 2e-5 50 Zea mays Zm.240.1.S1_at AJ011619.1 SBP-domain protein 6 - 5e-5 At2g42200 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010228 The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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