Gene omics information

Query gene ID At2g42010
Gene name PLDBETA1 (PHOSPHOLIPASE D BETA 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g42010818802PLDBETA1 (PHOSPHOLIPASE D BETA 1)phospholipase D (PLDbeta)S.X.H.G.
0.4050.8At3g12570820437FYDF:unknown;P:unknown;C:chloroplast envelope;PS.X.H.G.
0.157.8At1g61850842482galactolipase/ phospholipaseEncodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea.S.X.H.G.
0.135.8At1g07470837259transcription factor IIA large subunit, putative / TFIIA large subunit, putativeF:RNA polymerase II transcription factor activity, transcription factor activity;P:transcription initiation from RNA polymerase II promoter, transcription;C:transcription factor TFIIA complex;MFPOBVS.X.H.G.
0.071.9At5g42940834306zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
74.199.9GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
65.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
59.699.8E-MEXP-98-raw-cel-320188859
55.199.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
52.499.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
50.699.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
47.099.8E-MEXP-98-raw-cel-320188804
45.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.6801715At4g00240826673PLDBETA2member of C2-PLD subfamilyC.G.S.X.
0.271e-25119At4g11850826791PLDGAMMA1phospholipase D (gamma)C.G.S.X.
0.249e-24113At4g11840826790PLDGAMMA3member of C2-PLD subfamilyC.G.S.X.
0.251e-1689At4g11830826789PLDGAMMA2Encodes one of three phospholipase D enzymes of the gamma class.C.G.S.X.
0.104e-757At4g35790829733ATPLDDELTAEncodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.C.G.S.X.
0.061e-450At1g52570841689PLDALPHA2 (phosphlipase d alpha 2)member of C2-PLD subfamilyC.G.S.X.
0.027e-344At5g25370832609PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-1999Glycine maxGmaAffx.71432.1.S1_atBQ742102--6e-18At4g00240PLDBETA2C.G.S.X.
0.081e-861Hordeum vulgareContig8402_atContig8402--5e-12At4g35790ATPLDDELTAC.G.S.X.
0.162e-26123Oryza sativaOs03g0119100AK069519.1-Phospholipase D beta 28e-27At2g42010PLDBETA1 (PHOSPHOLIPASE D BETA 1)C.G.S.X.
0.462e-65252Populus trichocarpaPtpAffx.211492.1.S1_s_atpmrna22523hypothetical protein-1e-65At2g42010PLDBETA1 (PHOSPHOLIPASE D BETA 1)C.G.S.X.
0.091e-1379Triticum aestivumTa.3414.1.S1_atBJ265462--6e-14At2g42010PLDBETA1 (PHOSPHOLIPASE D BETA 1)C.G.S.X.
0.025e-136Vitis vinifera1616981_atCB971105phospholipase D alpha-4e-52At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)C.G.S.X.
0.023e-344Zea maysZm.50.1.A1_atD73410.1phospholipase D-6e-34At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
XGO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00108Link to KaPPA-View 4Phospholipases pathway



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00564Link to KEGG PATHWAYGlycerophospholipid metabolism
00565Link to KEGG PATHWAYEther lipid metabolism
01100Link to KEGG PATHWAYMetabolic pathways
04144Link to KEGG PATHWAYEndocytosis
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