CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g42000

Gene name plant EC metallothionein-like family 15 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At2g42000 818800 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
0.93 96.4 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.92 96.0 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.90 95.1 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At2g42560 818856 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.89 94.6 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At5g42290 834234 transcription activator-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.89 94.6 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
0.88 94.0 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.88 94.0 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1125.8 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
1021.4 100.0 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
385.3 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
271.9 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
212.1 100.0 GSM133312 RIKEN-LI1B GSE5701 AtGenExpress: Basic hormone treatment of seeds
204.8 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
202.2 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
167.7 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
166.5 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
157.4 99.9 GSM133318 RIKEN-LI4B GSE5701 AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 2e-41 169 At2g23240 816856 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;POMB C.G. S.X.
0.01 7e-1 34 At3g16857 820940 ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. C.G. S.X.
0.02 3e+0 32 At5g62070 836327 IQD23 (IQ-domain 23) F:calmodulin binding;P:unknown;C:unknown;PMOF C.G. S.X.
0.03 3e+0 32 At4g35390 829692 AGF1 (AT-hook protein of GA feedback 1) F:transcription factor activity;P:negative regulation of gibberellic acid mediated signaling;C:nucleus;POBMFAV C.G. S.X.
0.02 3e+0 32 At3g60470 825218 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+1 30 At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max GmaAffx.64695.1.S1_at BM528166 - - 8e-1 At4g02871 unknown protein C.G. S.X.
0.05 3e-1 34 Hordeum vulgare rbaal3p07_s_at rbaal3p07 - - 6e-1 At2g42000 plant EC metallothionein-like family 15 protein C.G. S.X.
0.06 3e-1 36 Oryza sativa Os12g0571000 9640.m03722 - Metallothionein-like protein type 1 1e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.05 4e+0 32 Populus trichocarpa PtpAffx.50031.2.A1_at DN484504 hypothetical protein - 1e+0 At1g27695 glycine-rich protein C.G. S.X.
0.06 2e-1 36 Triticum aestivum TaAffx.28833.1.S1_s_at CA655690 - - 2e-1 At2g42000 plant EC metallothionein-like family 15 protein C.G. S.X.
0.12 3e-9 59 Vitis vinifera 1613608_at CB916843 - - 2e-8 At2g42000 plant EC metallothionein-like family 15 protein C.G. S.X.
0.03 4e+0 30 Zea mays Zm.947.1.A1_at BF733123 - - 2e-2 At3g17180 scpl33 (serine carboxypeptidase-like 33) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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