CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g41800

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P S.X. H.G.
0.79 89.1 At1g33750 840266 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO S.X. H.G.
0.78 88.6 At4g01240 827909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At5g66280 836760 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) GDP-D-mannose 4,6-dehydratase S.X. H.G.
0.74 86.1 At2g43480 818949 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM S.X. H.G.
0.71 84.2 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.69 82.9 At5g14020 831250 - F:unknown;P:N-terminal protein myristoylation;C:vacuole;P S.X. H.G.
0.64 78.9 At4g23590 828459 aminotransferase class I and II family protein F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF S.X. H.G.
0.64 78.9 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.64 78.9 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
164.7 100.0 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
160.3 99.9 GSM270814 Arabidopsis cell culture, 4 h_control_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
146.1 99.9 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
139.7 99.9 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
135.5 99.9 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
116.3 99.9 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
106.1 99.9 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
104.7 99.9 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
104.1 99.9 GSM133991 Birnbaum_1-24_gl2-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
102.0 99.9 GSM266664 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 6e-84 311 At2g41810 818780 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB C.G. S.X.
0.07 6e-4 46 At3g08030 819994 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;PB C.G. S.X.
0.04 1e-1 38 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.03 6e-1 36 At5g11420 831013 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P C.G. S.X.
0.01 6e-1 36 At5g16260 831486 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB C.G. S.X.
0.01 6e-1 36 At4g20160 827762 - F:unknown;P:unknown;C:chloroplast;MOFBPVA C.G. S.X.
0.03 6e-1 36 At1g68765 843208 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely. C.G. S.X.
0.01 2e+0 34 At5g59580 836077 UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:unknown;PMBVOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 42 Glycine max Gma.3893.2.S1_at AW310433 - - 3e-9 At3g08030 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare EBpi01_SQ005_J19_at EBpi01_SQ005_J19 - - 8e-1 At4g27350 unknown protein C.G. S.X.
0.03 2e-5 52 Oryza sativa Os.4980.1.S1_at - - - 0 C.G. S.X.
0.05 3e-6 54 Populus trichocarpa PtpAffx.158656.1.A1_a_at CV256722 hypothetical protein - 2e-4 At2g41810 - C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.80866.1.S1_at CA691710 - - 4e+0 At4g28280 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1615825_s_at CB915659 hypothetical protein LOC100260692 - 8e-1 At3g46666 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.3982.1.A1_at AW146684 50S ribosomal protein L21 - 2e-3 At1g35680 50S ribosomal protein L21, chloroplast / CL21 (RPL21) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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