CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g41640

Gene name transferase, transferring glycosyl groups

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
1.00 100.0 At1g23710 838981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.86 93.1 At1g28480 839748 GRX480 Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk. S.X. H.G.
0.86 93.1 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.67 81.6 At3g25250 822119 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) Arabidopsis protein kinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
274.0 100.0 E-MEXP-807-raw-cel-1173273088
265.0 100.0 E-MEXP-807-raw-cel-1173273223
264.0 100.0 E-MEXP-807-raw-cel-1173273170
259.0 100.0 E-MEXP-807-raw-cel-1173273116
233.1 100.0 E-MEXP-807-raw-cel-1173273196
210.8 100.0 E-MEXP-807-raw-cel-1173273060
181.5 100.0 E-MEXP-807-raw-cel-1173273144
147.3 99.9 E-MEXP-807-raw-cel-1173273252
123.7 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
120.7 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 7e-35 149 At3g57380 824905 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF C.G. S.X.
0.17 4e-15 83 At3g10320 820194 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF C.G. S.X.
0.02 5e-2 40 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.01 2e-1 38 At5g64280 836549 DiT2.2 (dicarboxylate transporter 2.2) F:oxoglutarate:malate antiporter activity;P:malate transport, sodium ion transport;C:chloroplast, membrane;BOPAFMV C.G. S.X.
0.01 2e-1 38 At1g67780 843103 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.01 7e-1 36 At5g41020 834104 myb family transcription factor F:transcription factor activity, DNA binding;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.00 7e-1 36 At5g53460 835427 GLT1 NADH-dependent glutamate synthase C.G. S.X.
0.01 7e-1 36 At5g11530 831025 EMF1 (embryonic flower 1) Involved in regulating reproductive development C.G. S.X.
0.01 7e-1 36 At4g35520 829704 MLH3 (MUTL PROTEIN HOMOLOG 3) DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max Gma.16866.1.A1_at CD403770 - - 3e-2 At1g57750 CYP96A15 (CYTOCHROME P450 96 A1) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig16765_at Contig16765 - - 2e-2 At3g54090 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.03 4e-1 38 Oryza sativa Os01g0498300 AK069247.1 - Protein of unknown function DUF563 family protein 3e-1 At2g41640 transferase, transferring glycosyl groups C.G. S.X.
0.24 8e-11 69 Populus trichocarpa PtpAffx.151298.1.S1_at BU877260 hypothetical protein - 2e-11 At2g41640 transferase, transferring glycosyl groups C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.80949.1.S1_at CA690877 - - 3e+0 At4g39190 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1621892_a_at BQ799195 hypothetical protein LOC100246316 - 2e-4 At2g38600 acid phosphatase class B family protein C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.531.1.A1_at AI711719 - - 8e-1 At5g20370 serine-rich protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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