Gene omics information

Query gene ID At2g41560
Gene name ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g41560818754ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.S.X.H.G.
0.4152.4At5g02250830864EMB2730 (EMBRYO DEFECTIVE 2730)Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.S.X.H.G.
0.4050.8At1g36320840539unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.4050.8At3g60320825203DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMPFBVAS.X.H.G.
0.3745.0At5g06130830500chaperone protein dnaJ-relatedF:unknown;P:unknown;C:unknown;PBOS.X.H.G.
0.3745.0At1g07110837221F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase.S.X.H.G.
0.3745.0At3g11560820329unknown proteinF:unknown;P:unknown;C:chloroplast, chloroplast envelope;PS.X.H.G.
0.3643.6At4g33480829485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPFS.X.H.G.
0.3439.8At4g00730828022ANL2 (ANTHOCYANINLESS 2)Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root developmentS.X.H.G.
0.3439.8At3g05350819699aminopeptidase/ hydrolaseF:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
18.899.5E-MEXP-1304-raw-cel-1530620375
18.299.5E-MEXP-1304-raw-cel-1530618685
16.299.5E-MEXP-1304-raw-cel-1530618478
15.499.5GSM142802SS001_ATH1_A5-Smith-5GSE6174Gene expression and carbohydrate metabolism through the diurnal cycle
14.899.4E-MEXP-1299-raw-cel-1519901856
14.799.4E-MEXP-1304-raw-cel-1530620528
14.499.4E-MEXP-1304-raw-cel-1530620505
14.099.4E-MEXP-1304-raw-cel-1530618514
13.699.4E-MEXP-1304-raw-cel-1530618308
13.599.4E-MEXP-1304-raw-cel-1530620399
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8301342At3g57330824900ACA11 (autoinhibited Ca2+-ATPase 11)F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:chloroplast, plasma membrane, vacuole;BMOFPAVC.G.S.X.
0.144e-32141At2g22950816826calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVC.G.S.X.
0.128e-24113At4g37640829918ACA2 (CALCIUM ATPASE 2)Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.C.G.S.X.
0.022e-1275At5g57110835815ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.C.G.S.X.
0.103e-1171At1g27770839670ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.C.G.S.X.
0.032e-656At3g22910821863calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVC.G.S.X.
0.043e-242At3g21180821671ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-62242Glycine maxGma.6344.1.S1_s_atBU765544--5e-63At2g41560ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)C.G.S.X.
0.187e-35149Hordeum vulgareContig11449_atContig11449--9e-29At3g57330ACA11 (autoinhibited Ca2+-ATPase 11)C.G.S.X.
0.171e-24117Oryza sativaOs11g01404009640.m00336-Calcium-translocating P-type ATPase, PMCA-typefamily protein2e-24At3g57330ACA11 (autoinhibited Ca2+-ATPase 11)C.G.S.X.
0.262e-28129Populus trichocarpaPtpAffx.218924.1.S1_atpmrna34683autoinhibited calcium ATPase-1e-28At2g41560ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)C.G.S.X.
0.184e-35151Triticum aestivumTa.10263.1.S1_atCA703693--1e-35At2g41560ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)C.G.S.X.
0.114e-2099Vitis vinifera1613997_atCB970314hypothetical protein LOC100246545-3e-13At3g57330ACA11 (autoinhibited Ca2+-ATPase 11)C.G.S.X.
0.044e-240Zea maysZm.17277.1.S1_atCF273093--1e-45At5g57110ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009624A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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