CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g41440

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At2g41440 818742 unknown protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
0.50 65.3 At4g27980 828911 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.39 48.4 At3g09550 820112 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.33 38.1 At3g28630 822493 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.30 32.1 At4g34940 829646 ARO1 (ARMADILLO REPEAT ONLY 1) Armadillo repeat protein. One of a family of four in Arabidopsis. Located in the nucleus and cytoplasm of pollen vegetative cells, and in the cytoplasm of egg cells. Involved in the signaling network controlling tip growth and actin organization in the pollen tube. S.X. H.G.
0.29 30.3 At3g13900 820603 ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV S.X. H.G.
0.22 17.5 At1g79640 844303 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.21 15.8 At1g69280 843259 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
328.8 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
242.9 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
204.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
202.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
186.6 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
186.0 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
165.1 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.7 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
161.6 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
152.1 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 7e-9 61 At2g41470 818745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;PMO C.G. S.X.
0.15 7e-6 52 At2g41445 6241054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-1 36 At5g50220 835087 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 4e-1 36 At5g02310 830916 PRT6 (PROTEOLYSIS 6) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. C.G. S.X.
0.01 4e-1 36 At3g44730 823602 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOPFB C.G. S.X.
0.01 4e-1 36 At2g32230 817782 pentatricopeptide (PPR) repeat-containing protein F:antiporter activity, drug transporter activity;P:multidrug transport;C:membrane;PMOF C.G. S.X.
0.01 2e+0 34 At5g37150 833688 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFBOPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.23956.1.S1_at BQ080104 - - 8e-1 At2g41440 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare X92754_at X92754 - - 7e-23 At4g34230 ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) C.G. S.X.
0.03 8e-1 36 Oryza sativa Os04g0660100 AK109923.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e+0 At5g13330 Rap2.6L (related to AP2 6L) C.G. S.X.
0.02 2e+0 34 Populus trichocarpa PtpAffx.94700.1.A1_at CV275220 - - 1e+0 At4g19540 INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) C.G. S.X.
0.04 7e+0 32 Triticum aestivum TaAffx.50247.1.S1_at CA743954 - - 2e-1 At1g74530 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1622712_s_at CD801320 hypothetical protein LOC100267597 - 6e+0 At2g13272 unknown protein C.G. S.X.
0.03 7e-1 34 Zea mays Zm.10831.1.S1_at BQ619456 - - 6e-1 At5g04347 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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