CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g41410

Gene name calmodulin, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At2g41410 818739 calmodulin, putative F:calcium ion binding;P:unknown;C:plasma membrane;MPFOB S.X. H.G.
0.51 66.3 At3g47550 823909 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to salt stress;C:unknown;MPOFV S.X. H.G.
0.49 63.5 At5g04170 830295 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.44 57.2 At1g11180 837659 secretory carrier membrane protein (SCAMP) family protein F:transmembrane transporter activity;P:protein transport;C:integral to membrane;MPOF S.X. H.G.
0.41 52.4 At4g34180 829566 cyclase family protein F:molecular_function unknown;P:response to salt stress;C:cell wall;BOAPM S.X. H.G.
0.40 50.8 At1g63830 842686 proline-rich family protein F:unknown;P:unknown;C:plasma membrane, membrane;POMFB S.X. H.G.
0.40 50.8 At1g22510 838857 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MOPFBV S.X. H.G.
0.39 48.4 At3g12740 820456 ALIS1 (ALA-INTERACTING SUBUNIT 1) Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3. S.X. H.G.
0.39 48.4 At3g57090 824876 BIGYIN Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division. S.X. H.G.
0.37 45.0 At3g17410 821005 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.9 99.5 GSM157318 Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
16.3 99.5 GSM128660 Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
15.3 99.4 GSM268247 WT-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
14.8 99.4 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
14.3 99.4 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
13.5 99.4 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
13.3 99.4 E-MEXP-1725-raw-cel-1669614592
13.1 99.4 E-MEXP-1725-raw-cel-1669614572
12.7 99.3 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.8 99.3 GSM157312 Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 6e-12 71 At3g10190 820181 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPFOB C.G. S.X.
0.01 2e-2 40 At2g21440 816683 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAV C.G. S.X.
0.01 8e-2 38 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA C.G. S.X.
0.02 8e-2 38 At1g51550 841580 F-box family protein F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:chloroplast;MOPFBA C.G. S.X.
0.02 3e-1 36 At5g44280 834451 RING1A (RING 1A) Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. C.G. S.X.
0.01 3e-1 36 At5g06050 830492 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:endomembrane system;PBOM C.G. S.X.
0.03 3e-1 36 At4g16610 827362 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMFOB C.G. S.X.
0.03 3e-1 36 At1g01020 839569 ARV1 F:molecular_function unknown;P:sterol metabolic process, sphingolipid metabolic process;C:endoplasmic reticulum, membrane;MFOP C.G. S.X.
0.02 3e-1 36 At1g75540 843890 STH2 (SALT TOLERANCE HOMOLOG2) F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 Glycine max GmaAffx.33050.1.S1_x_at BE022504 - - 3e-2 At2g41410 calmodulin, putative C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HS08H05u_at HS08H05u - - 2e-4 At5g60460 sec61beta family protein C.G. S.X.
0.04 6e-1 36 Oryza sativa Os09g0367300 9637.m01718 - - 1e-2 At4g37810 unknown protein C.G. S.X.
0.08 2e+0 34 Populus trichocarpa PtpAffx.467.1.S1_s_at BU871844 hypothetical protein - 2e-10 At3g10190 calmodulin, putative C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.97873.2.A1_at BJ273376 - - 3e-1 At2g41410 calmodulin, putative C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1608378_at CB346353 - - 2e-1 At2g41410 calmodulin, putative C.G. S.X.
0.03 5e-1 34 Zea mays ZmAffx.29.1.A1_at AI657322 - - 2e-1 At1g65445 transferase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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