CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g41380

Gene name embryo-abundant protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA S.X. H.G.
0.67 81.6 At1g08430 837363 ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1) Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited). S.X. H.G.
0.67 81.6 At3g16330 820880 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.20 14.4 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF S.X. H.G.
0.10 3.4 At2g15760 816070 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:plasma membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
204.5 100.0 E-MEXP-1797-raw-cel-1669768030
157.5 99.9 E-MEXP-1797-raw-cel-1669767940
141.6 99.9 E-MEXP-1797-raw-cel-1669767967
83.3 99.9 E-MEXP-1797-raw-cel-1669768066
82.1 99.9 E-MEXP-1797-raw-cel-1669768012
74.7 99.9 E-MEXP-1797-raw-cel-1669767985
74.1 99.9 E-MEXP-1797-raw-cel-1669767994
67.4 99.8 E-MEXP-1797-raw-cel-1669767976
64.6 99.8 E-ATMX-31-raw-cel-1516947882
63.9 99.8 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At5g56300 835729 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. C.G. S.X.
0.02 4e-1 36 At4g13310 826961 CYP71A20 putative cytochrome P450 C.G. S.X.
0.02 4e-1 36 At4g13290 826959 CYP71A19 putative cytochrome P450 C.G. S.X.
0.01 4e-1 36 At2g04865 815033 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBVF C.G. S.X.
0.02 4e-1 36 At1g64450 842753 proline-rich family protein F:unknown;P:unknown;C:unknown;MBOPFVA C.G. S.X.
0.01 2e+0 34 At5g23850 832450 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVA C.G. S.X.
0.01 2e+0 34 At5g41220 834124 ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3) Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002). C.G. S.X.
0.02 2e+0 34 At5g02750 831806 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-4 46 Glycine max GmaAffx.91037.1.S1_s_at CF806762 - - 4e-4 At2g41380 embryo-abundant protein-related C.G. S.X.
0.03 8e-1 34 Hordeum vulgare EBpi07_SQ002_E08_at EBpi07_SQ002_E08 - - 4e+0 At3g30220 unknown protein C.G. S.X.
0.03 5e-2 40 Oryza sativa Os05g0439750 9633.m03398 - - 1e-2 At2g41380 embryo-abundant protein-related C.G. S.X.
0.03 2e+0 34 Populus trichocarpa Ptp.5027.1.S1_at CF228912 hypothetical protein - 2e-8 At2g30170 catalytic C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.7160.2.A1_at BJ318737 - - 1e+0 At3g02950 - C.G. S.X.
0.04 2e-6 52 Vitis vinifera 1620276_at CF605672 hypothetical protein LOC100253741 - 9e-6 At2g41380 embryo-abundant protein-related C.G. S.X.
0.02 2e-1 36 Zea mays Zm.17408.1.A1_at BE129731 hypothetical protein LOC100273071 - 4e-1 At2g41380 embryo-abundant protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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