Gene omics information

Query gene ID At2g41310
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g41310818730ATRR3 (RESPONSE REGULATOR 3)Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling.S.X.H.G.
0.2217.5At4g24760828578unknown proteinF:unknown;P:unknown;C:unknown;OBMPFVAS.X.H.G.
0.157.8At3g53100824476GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
0.061.4At1g47290841132AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)Encodes an enzyme with 3β-hydroxysteroid dehydrogenase/C4-decarboxylase activity in vitro. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the Arabidopsis gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound.S.X.H.G.
0.030.6At2g17150816220RWP-RK domain-containing proteinF:transcription factor activity;P:unknown;C:unknown;POFMS.X.H.G.
0.020.4At5g15790831435zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFVS.X.H.G.
0.020.4At4g09630826549-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
96.199.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.662e-98359At2g07440815313two-component responsive regulator-related / response regulator protein-relatedF:unknown;P:unknown;C:cellular_component unknown;PC.G.S.X.
0.536e-83307At3g57040824871ARR9 (RESPONSE REGULATOR 9)response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2C.G.S.X.
0.072e-963At1g10470837587ARR4 (RESPONSE REGULATOR 4)Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.C.G.S.X.
0.146e-652At2g40670818662ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)response regulator 16C.G.S.X.
0.132e-550At3g48100823965ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.C.G.S.X.
0.041e-344At1g59940842288ARR3 (RESPONSE REGULATOR 3)Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.C.G.S.X.
0.042e-240At5g50090835073unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PC.G.S.X.
0.033e-136At5g35320833486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.199e-1891Glycine maxGma.3911.1.S1_atBE822480--3e-24At3g57040ARR9 (RESPONSE REGULATOR 9)C.G.S.X.
0.033e+032Hordeum vulgareHVSMEc0012J16f_atHVSMEc0012J16f--2e-90Atcg00170-C.G.S.X.
0.097e-446Oryza sativaOs11g0143300AK058585.1--5e-7At3g57040ARR9 (RESPONSE REGULATOR 9)C.G.S.X.
0.417e-37155Populus trichocarpaPtpAffx.213255.1.S1_s_atpmrna25930type-a response regulator-3e-37At2g41310ATRR3 (RESPONSE REGULATOR 3)C.G.S.X.
0.074e-446Triticum aestivumTaAffx.113141.1.S1_atCA617704--2e-8At1g10470ARR4 (RESPONSE REGULATOR 4)C.G.S.X.
0.056e-340Vitis vinifera1608140_atCF211124hypothetical protein LOC100258759-2e-16At3g48100ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)C.G.S.X.
0.062e-446Zea maysZm.325.1.A1_atAB042268.1response regulator 6-2e-7At3g57040ARR9 (RESPONSE REGULATOR 9)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
XGO:0007623Any biological process in an organism that recurs with a regularity of approximately 24 hours.
XGO:0006950A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
XGO:0009736A series of molecular signals induced by the detection of cytokinin.
CGO:0000160A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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