CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g41200

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g41200 818719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At1g63310 842637 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At4g35970 829751 APX5 (ASCORBATE PEROXIDASE 5) Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. S.X. H.G.
0.98 97.8 At3g18260 821354 reticulon family protein (RTNLB9) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF S.X. H.G.
0.97 97.6 At1g02950 838240 ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.97 97.6 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance S.X. H.G.
0.97 97.6 At1g68230 843152 reticulon family protein (RTNLB14) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P S.X. H.G.
0.97 97.6 At2g27140 817256 heat shock family protein F:molecular_function unknown;P:response to heat;C:membrane;PBOM S.X. H.G.
0.97 97.6 At3g13590 820561 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO S.X. H.G.
0.97 97.6 At3g47180 823871 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1967.5 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
1240.0 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
631.5 100.0 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
304.0 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
52.5 99.8 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
36.7 99.7 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
24.6 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
6.1 98.5 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
5.0 98.1 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
4.8 98.0 GSM258004 LMPC-derived phloem_3 GSE10247 Transcriptome analysis of the Arabidopsis phloem
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 38 At2g23520 816884 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA C.G. S.X.
0.02 2e-1 36 At3g56620 824829 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:membrane;BPOAM C.G. S.X.
0.04 2e-1 36 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 36 At3g14470 820670 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.04 2e-1 36 At2g28740 817423 HIS4 histone 4 C.G. S.X.
0.03 9e-1 34 At4g14465 827093 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM C.G. S.X.
0.02 9e-1 34 At4g23650 828465 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. C.G. S.X.
0.02 9e-1 34 At3g20810 821629 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Glycine max GmaAffx.77423.1.S1_at BG882550 - - 1e-9 At2g21520 transporter C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig7669_s_at Contig7669 - - 1e+0 At5g63905 unknown protein C.G. S.X.
0.05 5e-1 36 Oryza sativa OsAffx.7491.1.A1_at - - - 0 C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.28960.1.A1_at BP934360 - - 3e-1 At2g41200 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.57651.1.S1_at CA626276 - - 6e-1 At2g05510 glycine-rich protein C.G. S.X.
0.02 4e+0 30 Vitis vinifera 1619293_at CB970865 hypothetical protein LOC100261745 - 2e-31 At5g15750 RNA-binding S4 domain-containing protein C.G. S.X.
0.04 6e+0 30 Zea mays Zm.9643.1.A1_x_at BM347294 - - 3e+0 At2g07721 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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