Gene omics information

Query gene ID At2g41200
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g41200818719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9897.8At1g63310842637-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9897.8At4g35970829751APX5 (ASCORBATE PEROXIDASE 5)Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.S.X.H.G.
0.9897.8At3g18260821354reticulon family protein (RTNLB9)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFS.X.H.G.
0.9797.6At1g02950838240ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.9797.6At1g05760837084RTM1 (restricted tev movement 1)Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistanceS.X.H.G.
0.9797.6At1g68230843152reticulon family protein (RTNLB14)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PS.X.H.G.
0.9797.6At2g27140817256heat shock family proteinF:molecular_function unknown;P:response to heat;C:membrane;PBOMS.X.H.G.
0.9797.6At3g13590820561DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POS.X.H.G.
0.9797.6At3g47180823871zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1967.5100.0GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
1240.0100.0GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
631.5100.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
304.0100.0GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
52.599.8GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
36.799.7GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
24.699.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
6.198.5GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
5.098.1GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
4.898.0GSM258004LMPC-derived phloem_3GSE10247Transcriptome analysis of the Arabidopsis phloem
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-238At2g23520816884catalytic/ pyridoxal phosphate bindingF:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBAC.G.S.X.
0.022e-136At3g56620824829integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:membrane;BPOAMC.G.S.X.
0.042e-136At3g25930822190universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;PC.G.S.X.
0.012e-136At3g14470820670disease resistance protein (NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFAC.G.S.X.
0.042e-136At2g28740817423HIS4histone 4C.G.S.X.
0.039e-134At4g14465827093DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMC.G.S.X.
0.029e-134At4g23650828465CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.C.G.S.X.
0.029e-134At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+034Glycine maxGmaAffx.77423.1.S1_atBG882550--1e-9At2g21520transporterC.G.S.X.
0.031e-136Hordeum vulgareContig7669_s_atContig7669--1e+0At5g63905unknown proteinC.G.S.X.
0.055e-136Oryza sativaOsAffx.7491.1.A1_at---0C.G.S.X.
0.043e-136Populus trichocarpaPtpAffx.28960.1.A1_atBP934360--3e-1At2g41200unknown proteinC.G.S.X.
0.041e+034Triticum aestivumTaAffx.57651.1.S1_atCA626276--6e-1At2g05510glycine-rich proteinC.G.S.X.
0.024e+030Vitis vinifera1619293_atCB970865hypothetical protein LOC100261745-2e-31At5g15750RNA-binding S4 domain-containing proteinC.G.S.X.
0.046e+030Zea maysZm.9643.1.A1_x_atBM347294--3e+0At2g07721unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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