Gene omics information

Query gene ID At2g41100
Gene name TCH3 (TOUCH 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1710.2At2g41100818709TCH3 (TOUCH 3)encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.S.X.H.G.
0.5773.8At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOS.X.H.G.
0.5065.3At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.S.X.H.G.
0.4050.8At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.3541.6At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.499.7E-MEXP-807-raw-cel-1173273223
29.999.7E-MEXP-807-raw-cel-1173273088
28.499.7E-MEXP-807-raw-cel-1173273060
28.399.7E-MEXP-807-raw-cel-1173273144
22.699.6E-MEXP-807-raw-cel-1173273032
22.399.6E-MEXP-807-raw-cel-1173273252
20.399.6E-MEXP-807-raw-cel-1173273196
19.699.6GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
17.599.5E-MEXP-807-raw-cel-1173273116
16.499.5E-MEXP-807-raw-cel-1173272894
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.273e-42173At2g41110818710CAM2 (CALMODULIN 2)Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.C.G.S.X.
0.257e-25115At3g56800824847CAM3 (CALMODULIN 3)encodes a calmodulinC.G.S.X.
0.317e-25115At2g41090818708calmodulin-like calcium-binding protein, 22 kDa (CaBP-22)F:calcium ion binding;P:unknown;C:cellular_component unknown;MFPOBVC.G.S.X.
0.132e-963At3g43810823492CAM7 (CALMODULIN 7)EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.C.G.S.X.
0.163e-550At5g37780833756CAM1 (CALMODULIN 1)encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.C.G.S.X.
0.093e-550At1g66410842959CAM4 (calmodulin 4)encodes a calmodulinC.G.S.X.
0.281e-448At5g21274832245CAM6 (CALMODULIN 6)Encodes a calmodulin isoform. Expressed in leaves.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.103e-344Glycine maxGmaAffx.92868.1.S1_s_atCF808593calmodulin-2e-94At3g56800CAM3 (CALMODULIN 3)C.G.S.X.
0.076e-238Hordeum vulgareContig1340_atContig1340--2e-55At5g21274CAM6 (CALMODULIN 6)C.G.S.X.
0.102e-552Oryza sativaOs07g0687200AF441191.1-Calmodulin (CaM) (BC329)2e-108At5g37780CAM1 (CALMODULIN 1)C.G.S.X.
0.107e-136Populus trichocarpaPtpAffx.454.4.A1_x_atCV271836hypothetical protein-9e-98At3g56800CAM3 (CALMODULIN 3)C.G.S.X.
0.083e-550Triticum aestivumTaAffx.113236.1.S1_atCA626069--6e-30At3g43810CAM7 (CALMODULIN 7)C.G.S.X.
0.081e-756Vitis vinifera1610944_atBQ794641hypothetical protein LOC100261610-1e-103At5g21274CAM6 (CALMODULIN 6)C.G.S.X.
0.082e-756Zea maysZm.3864.1.A1_atAY106452.1calmodulin2-8e-80At3g56800CAM3 (CALMODULIN 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009652The movement of an organism, or part of an organism, such as leaves or tendrils, in response to a touch stimulus, usually toward or away from it.
XGO:0009612A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
XGO:0009646A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli.
NGO:0009266A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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